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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Wh_SHC_all.Contig1457
Contig Information
Length 733 bp
Tissue Shoot grown with cold treatment
Clones 3 Clones [Download: CSV  ,  FASTA ]
whsc1m20    rwhsc17f24    rwhsc1m20   
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os07g0565000 [Oryza sativa (japonica cultivar-group)] >gi|33146750|dbj|BAC79661.1| putative 40S ribosomal protein S11 [Oryza sativa Japonica Group] >gi|50508298|dbj|BAD30107.1| putative 40S ribosomal protein S11 [Oryza sativa Japonica Group] >gi|113611543|dbj|BAF21921.1| Os07g0565000 [Oryza sativa (japonica cultivar-group)] >gi|215768067|dbj|BAH00296.1| unnamed protein product [Oryza sativa Japonica Group] >gi|218195559|gb|EEC77986.1| hypothetical protein OsI_17372 [Oryza sativa Indica Group]
Score 731
Evalue 1.45417e-75
Total Hit Count 500
Registered year 2003
Contig Sequence     [ Download ]
>Wh_SHC_all.Contig1457 
TGACCGTACAATTTTAAGCAAAACTATTAATGATAGATAGATTCCACAAGACATGTTCAGATCACGACATTCTTCGGTTTGACAGAAAACACAGGAATCA
AATCGCAAAACAGCAGCAGCCTGGTAGGTTTAAGTGCTTAAAACGTCTGACTATGAACTACTCATGAATCAGAGCCTGGGCTTAAGCAGCGATGAAAGCC
TTCTTCCCGCCTCCGGTGGTTCCAGCTGGAACAACCTTCAGGACATTGAATCTCACGGTTTTCGACAGGGGCCTGCACTGGCCAATGATGACATGGTCGC
CTTCCTTGACTCGGAAGCAGGGGGAGATGTGAGCTGGGATGTTGGAGTGCCTCTTCTCATACCTCTGATACTTCTTCACAAAATGAAGGTAGTTCCTGCG
AACAATGATGGTCCTGTTCATCTTGGCACTGTGGCAGGTTCCAGCTATGATTCTGCCCCTGATGGCAACAGTTCCAGTGAATGGGCACTTCTTGTCAATG
TAGGTACCATCGATCGCTTCCCTTGGGGTCTTGAAACCAAGGCCAACACTCTTCCAGAAGCGGTTGCCAGCCTTGCCTGGCCTCTTGGCCTTGTCGGCCT
TTTTCGTGCTGAGGAAAACCTTTGGCTGCTTGAGGAAAGACTTCTCGGTCTGCTCCGCCATGGCTGCGAGGTGGGCGTCGAGGGGCTCGGAGGCGGCGGC
GGCGGCGCGTCGAGGGGAAGCGGGAGCAAGGCT
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