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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Wh_EMC_all.Contig1288
Contig Information
Length 365 bp
Tissue Dormant seed with cold treatment after water absorption
Clones 2 Clones [Download: CSV  ,  FASTA ]
whec10d01    rwhec10d01   
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os01g0840200 [Oryza sativa (japonica cultivar-group)] >gi|15623836|dbj|BAB67895.1| putative SLT1 protein [Oryza sativa Japonica Group] >gi|21104623|dbj|BAB93215.1| putative SLT1 protein [Oryza sativa Japonica Group] >gi|50726944|gb|AAT81168.1| sodium/lithium tolerance protein [Oryza sativa (japonica cultivar-group)] >gi|113534289|dbj|BAF06672.1| Os01g0840200 [Oryza sativa (japonica cultivar-group)] >gi|125528328|gb|EAY76442.1| hypothetical protein OsI_04376 [Oryza sativa Indica Group] >gi|125572586|gb|EAZ14101.1| hypothetical protein OsJ_003926 [Oryza sativa (japonica cultivar-group)] >gi|215697702|dbj|BAG91696.1| unnamed protein product [Oryza sativa Japonica Group]
Score 103
Evalue 0.00337745
Total Hit Count 8
Registered year 2003
Contig Sequence     [ Download ]
>Wh_EMC_all.Contig1288 
GAAGAACATGAAGTCAGGGTCTCCATGCGCCCTCCTCACCTTGGAGTGAACGACCTGCTTATGACATAGGTAATGGGAGGTCTATCTTTCTTGTCTGTGA
TCACCAGATCGTATGCTGGAAGGGGCTACTGTTAGCGTCTTGTTCCGAGACTGTTGCTGTTGCTTACTGGGCTAGGCCTCTTCAGCAACAAGCTTTTGCT
GAAGATTAGTTCGTTCTAAGCTTGTATGTGACGGGTGTCTTTTTAACCCTCGTGTTCTCTTCTCCTAGCAGCATATTGTGGGTGGCCTGTTTGTCCTTGA
ATCTGTACCAAGTTCAGTTAACAGAATAAAATTTATATTTGGTGGGTTACTGCTCAAAAAAAAAA
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