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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

Contig Detail

Contig14779  (registered. 2002)
Contig Information
Length 1005 bp
Clones 13 Clones [Download: TSV  ,  FASTA ]
Wh Spike at meiosis 2
Wh_SL Seed DPA30 2
Wh_f Spike at flowering date 6
Wh_h Spike at heading date 3
Assemble Result Assemble Viewer
Homology (BLAST) Top Hit Os01g0182200 [Oryza sativa (japonica cultivar-group)] >gi|146325730|sp|Q5VR89|SIP11_ORYSJ RecName: Full=Aquaporin SIP1-1; AltName: Full=Small basic intrinsic protein 1-1; AltName: Full=OsSIP1;1 >gi|13122433|dbj|BAB32914.1| putative small basic membrane integral protein [Oryza sativa Japonica Group] >gi|113531747|dbj|BAF04130.1| Os01g0182200 [Oryza sativa (japonica cultivar-group)] >gi|125569287|gb|EAZ10802.1| hypothetical protein OsJ_000627 [Oryza sativa (japonica cultivar-group)] >gi|215741129|dbj|BAG97624.1| unnamed protein product [Oryza sativa Japonica Group] >gi|215766578|dbj|BAG98737.1| unnamed protein product [Oryza sativa Japonica Group]
Score 795
Evalue 9.43093e-83
Total Hit Count 500
Registered year 2002
Contig Sequence     [ Download ]
>Contig14779 
ttttttttttgactgataaattatcacttttaagttaaacatcgatgtaATGTTGAGGGGATTAAATAcagg*cCTTCCAAATTATT*CCCTAG*CAAAC
CATGTTCCCTTCTTCAGGT*CCCCCAATTGCTAAGTCAAAGTTTGTGCTTGAGTTCATCATGCTTTCTTGGTCTTGGGCTTAGGGGCCGGTGGCGGGAAC
ACGGCCCTGAAGGTCCACGCAGCGAGAATGGCACCGATGAAGGGGCATATCCAGTACACGTACAGC*TGCTCCCAGGTGTTGTGCAGATTGTTAACATAC
GCCCAACCAAAGGCGTTGGCAGGGTTCATGGAGGGGCCGGTGTACGCGGCGCCGGTGAGGACGAGGCTGACGGTGGAGACTGAGAGCATCGCTGTCTTGA
CGATGGGGTTGCGGGGTCCCTTGACGATGATGCAGAGGACGGCAAAGGTGATGACGAAGGTGAGCACCCCTTCAGCGACGGCGCCGGTGTGGGGATCCAC
CTTGAGCGAGGGTCCGCCGAGCATGTGCTTGTACTGCTCCGGCATCAGCTCGGAGATGGCCAGAGCTCCGCCCACGGCTCCGGCGGCCTGCGCTGGTAGG
CGGAGCGCGATGGAGAAGAGCGAGGGGCTGGTGAGGCCCGCGGCGTAGAAGGCGGCGACGCCGGTGGGGTTGAAGCTGGCGCCGCCGAGGGCGTCGCAGA
GGAGGTTGAAGGCGAAGAGGAGGAGGGCGAGGATGGAGACGGTGACGAGGAGGGCGTAGTGGATCCCCTCGTGCAGGCTGAGGTAGGTGGTGACGGCGGC
CGTGGAGGCGCCGAGCGTCGAGACGCAGAGCACCCAGAGGAAGGTCACGACGCCGTCCGCCGCCGCCTCCCGCACAGCCGCTCCCATCGCCAT*CCGAGC
GCTCCTT*CCGTGCTTGCTTCCCTCACTCCGTCGTCGCTGCTGGCAGTGA*TTGGTGGTGG*GTTGGGTGGATGTATGTATGGGTATGGCTTGGCACACA
GCacc
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