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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

List

*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 64
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Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
BJ208624 wh10a05 2002 5' Spike at meiosis 389bp Contig16167 Contig16167 P38548 GO:0005525 GTP binding hypothetical protein [Vitis vinifera] 633 1.1196e-64
BJ208841 wh11b17 2002 5' Spike at meiosis 608bp Contig16167 Contig16167 Q03033 GO:0005525 GTP binding hypothetical protein [Vitis vinifera] 679 9.80552e-70
BJ209990 wh16k18 2002 5' Spike at meiosis 639bp Contig16167 Contig16167 P02275 GO:0000786 nucleosome hypothetical protein [Vitis vinifera] 679 1.09475e-69
BJ213759 wh24c02 2002 5' Spike at meiosis 181bp Contig16167 Contig16167 P50682 GO:0016021 integral to membrane unknown [Zea mays] 257 4.41232e-21
BJ214328 wh26o05 2002 5' Spike at meiosis 689bp Contig16167 Contig16167 Q9VMQ5 GO:0006744 ubiquinone biosynthesis hypothetical protein [Vitis vinifera] 679 1.29976e-69
BJ214331 wh26o11 2002 5' Spike at meiosis 596bp Contig16167 Contig16167 P27522 GO:0009522 photosystem I unknown [Zea mays] 641 2.36422e-65
BJ211684 wh32i14 2002 5' Spike at meiosis 549bp Contig16167 Contig16167 P26360 GO:0016787 hydrolase activity hypothetical protein [Vitis vinifera] 679 7.62234e-70
BJ207405 wh3j17 2002 5' Spike at meiosis 552bp Contig16167 Contig16167 Q9Z986 GO:0005524 ATP binding hypothetical protein [Vitis vinifera] 679 7.75606e-70
BJ215890 rwh10a05 2002 3' Spike at meiosis 515bp Contig16167 Contig16167 O23717 P59169 P59169 P59169 P59169 GO:0005829 GO:0000786 GO:0003677 GO:0005634 GO:0005694 cytosol ,  nucleosome ,  DNA binding ,  nucleus ,  chromosome unknown [Zea mays] 631 2.27438e-64
BJ216198 rwh11b17 2002 3' Spike at meiosis 282bp Contig16167 Contig16167 P03993 P59169 P59169 P59169 P59169 GO:0005634 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleus ,  nucleosome ,  DNA binding ,  nucleus ,  chromosome unknown [Zea mays] 296 1.33134e-25
BJ217402 rwh16k18 2002 3' Spike at meiosis 201bp Contig16167 Contig16167 Q9UIF9 P06353 P06353 P06353 P06353 GO:0005634 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleus ,  nucleosome ,  DNA binding ,  nucleus ,  chromosome predicted protein [Nematostella vectensis] 148 1.96214e-08
BJ221263 rwh24c02 2002 3' Spike at meiosis 466bp Contig16167 Contig16167 O27710 P59169 P59169 P59169 P59169 GO:0019295 GO:0000786 GO:0003677 GO:0005634 GO:0005694 coenzyme M biosynthesis ,  nucleosome ,  DNA binding ,  nucleus ,  chromosome unknown [Zea mays] 348 1.27376e-31
BJ221807 rwh26n17 2002 3' Spike at meiosis 316bp Contig16167 Contig16167 P49730 P06352 P06352 P06352 P06352 GO:0016491 GO:0000786 GO:0003677 GO:0005634 GO:0005694 oxidoreductase activity ,  nucleosome ,  DNA binding ,  nucleus ,  chromosome predicted protein [Nematostella vectensis] 149 1.52157e-08
BJ221815 rwh26o05 2002 3' Spike at meiosis 694bp Contig16167 Contig16167 P29036 P59169 P59169 P59169 P59169 GO:0006879 GO:0000786 GO:0003677 GO:0005634 GO:0005694 iron ion homeostasis ,  nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein [Vitis vinifera] 679 1.32602e-69
BJ221818 rwh26o11 2002 3' Spike at meiosis 513bp Contig16167 Contig16167 P32323 P59169 P59169 P59169 P59169 GO:0007155 GO:0000786 GO:0003677 GO:0005634 GO:0005694 cell adhesion ,  nucleosome ,  DNA binding ,  nucleus ,  chromosome unknown [Zea mays] 611 4.63928e-62
BJ214529 rwh2o07 2002 3' Spike at meiosis 259bp Contig16167 Contig16167 P25470 P08437 P08437 P08437 P08437 GO:0003677 GO:0000786 GO:0003677 GO:0005634 GO:0005694 DNA binding ,  nucleosome ,  DNA binding ,  nucleus ,  chromosome PREDICTED: similar to Histone H3.3B CG8989-PA [Bos taurus] 153 5.22653e-09
BJ218772 rwh30d17 2002 3' Spike at meiosis 357bp Contig16167 Contig16167 Q9PKX7 P59169 P59169 P59169 P59169 GO:0006098 GO:0000786 GO:0003677 GO:0005634 GO:0005694 pentose-phosphate shunt ,  nucleosome ,  DNA binding ,  nucleus ,  chromosome unknown [Zea mays] 545 1.80139e-54
BJ214684 rwh3j17 2002 3' Spike at meiosis 653bp Contig16167 Contig16167 P78424 P59169 P59169 P59169 P59169 GO:0006355 GO:0000786 GO:0003677 GO:0005634 GO:0005694 regulation of transcription, DNA-dependent ,  nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein [Vitis vinifera] 679 1.1607e-69
BJ288018 whsl12e23 2002 5' Seed DPA30 587bp Contig16167 Contig16167 Q06889 P59169 P59169 P59169 P59169 GO:0003677 GO:0000786 GO:0003677 GO:0005634 GO:0005694 DNA binding ,  nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein [Vitis vinifera] 679 9.0519e-70
BJ288277 whsl13l03 2002 5' Seed DPA30 627bp Contig16167 Contig16167 Q9FIZ9 P59169 P59169 P59169 P59169 GO:0016021 GO:0000786 GO:0003677 GO:0005634 GO:0005694 integral to membrane ,  nucleosome ,  DNA binding ,  nucleus ,  chromosome unknown [Zea mays] 566 1.33791e-56
BJ292896 whsl29k09 2002 5' Seed DPA30 591bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein [Vitis vinifera] 679 9.01048e-70
BJ292912 whsl29l11 2002 5' Seed DPA30 615bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein [Vitis vinifera] 679 1.0203e-69
BJ293356 whsl31l11 2002 5' Seed DPA30 615bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein [Vitis vinifera] 664 5.52588e-68
BJ294352 rwhsl12e23 2002 3' Seed DPA30 616bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein [Vitis vinifera] 679 1.0203e-69
BJ294604 rwhsl13l03 2002 3' Seed DPA30 331bp Contig16167 Contig16167 P06353 P06353 P06353 P06353 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome predicted protein [Nematostella vectensis] 138 2.82745e-07
BJ299295 rwhsl29k09 2002 3' Seed DPA30 258bp Contig16167 Contig16167 P08437 P08437 P08437 P08437 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein OsI_004454 [Oryza sativa (indica cultivar-group)] 176 1.12515e-11
BJ299306 rwhsl29l11 2002 3' Seed DPA30 611bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein [Vitis vinifera] 679 9.93803e-70
BJ299748 rwhsl31l11 2002 3' Seed DPA30 588bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome histone H3.2 [Arabidopsis thaliana] 528 9.3041e-62
BJ222812 whdl16b17 2002 5' Crown of seedling 563bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein [Vitis vinifera] 679 7.98697e-70
BJ223082 whdl2m14 2002 5' Crown of seedling 278bp Contig16167 Contig16167 P06353 P06353 P06353 P06353 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome predicted protein [Nematostella vectensis] 200 1.80993e-14
BJ227809 rwhdl16b17 2002 3' Crown of seedling 691bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein [Vitis vinifera] 679 1.29976e-69
BJ234772 whe13l16 2002 5' Seed DPA10 611bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein [Vitis vinifera] 679 9.93803e-70
BJ234818 whe13o23 2002 5' Seed DPA10 433bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome histone H3.2 [Arabidopsis thaliana] 506 1.82959e-56
BJ247025 whf26o10 2002 5' Spike at flowering date 562bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome unknown [Zea mays] 563 2.25606e-56
BJ247324 whf28j17 2002 5' Spike at flowering date 669bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein [Vitis vinifera] 679 1.22099e-69
BJ253000 rwhf26o10 2002 3' Spike at flowering date 542bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome unknown [Zea mays] 571 2.40948e-57
BJ253377 rwhf28j17 2002 3' Spike at flowering date 619bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome histone 3 [Picea abies] 662 9.67378e-68
BJ256001 whh3f18 2002 5' Spike at heading date 607bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome histone 3 [Picea abies] 650 2.22999e-66
BJ261530 rwhh3f18 2002 3' Spike at heading date 560bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein [Vitis vinifera] 672 5.09072e-69
BJ263961 rwhh7d19 2002 3' Spike at heading date 646bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein [Vitis vinifera] 679 1.13432e-69
BJ268106 whoh15c23 2002 5' Pistil at heading date 590bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein [Vitis vinifera] 679 9.01048e-70
BJ269229 whoh21a09 2002 5' Pistil at heading date 533bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein [Vitis vinifera] 679 6.81999e-70
BJ273026 rwhoh15c23 2002 3' Pistil at heading date 642bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein [Vitis vinifera] 679 1.12113e-69
BJ274046 rwhoh20f14 2002 3' Pistil at heading date 135bp Contig16167 Contig16167 P06352 P06352 P06352 P06352 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome histone 3 [Picea abies] 129 3.09802e-06
BJ274176 rwhoh21a09 2002 3' Pistil at heading date 635bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein [Vitis vinifera] 679 1.08156e-69
BJ279220 whr1n21 2002 5' Root 532bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein [Vitis vinifera] 679 6.81999e-70
BJ280695 whr9k11 2002 5' Root 499bp Contig16167 Contig16167 P02298 P02298 P02298 P02298 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome histone H3 199 2.52416e-14
BJ284286 rwhr1n21 2002 3' Root 656bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein [Vitis vinifera] 679 1.17389e-69
BJ286734 rwhr23b08 2002 3' Root 464bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome unknown [Zea mays] 321 1.67624e-28
BJ284557 rwhr3k01 2002 3' Root 417bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome unknown [Zea mays] 378 4.1352e-35
BJ285721 rwhr9k11 2002 3' Root 450bp Contig16167 Contig16167 P06353 P06353 P06353 P06353 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome predicted protein [Nematostella vectensis] 195 6.98667e-14
BJ301670 whyd11k06 2002 5' Spikelet at late flowering 293bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome unknown [Populus trichocarpa] 366 1.03975e-33
BJ303919 whyd21l13 2002 5' Spikelet at late flowering 580bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome unknown [Zea mays] 650 1.99474e-66
BJ304271 whyd23f03 2002 5' Spikelet at late flowering 531bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein [Vitis vinifera] 636 6.63578e-65
BJ305953 whyd24f21 2002 5' Spikelet at late flowering 694bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein [Vitis vinifera] 679 1.31289e-69
BJ304551 whyd9k06 2002 5' Spikelet at late flowering 558bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein [Vitis vinifera] 679 7.88979e-70
BJ307480 rwhyd11k06 2002 3' Spikelet at late flowering 617bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein [Vitis vinifera] 679 1.0203e-69
BJ309828 rwhyd21l13 2002 3' Spikelet at late flowering 595bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein [Vitis vinifera] 679 9.27549e-70
BJ310220 rwhyd23f03 2002 3' Spikelet at late flowering 371bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome unknown [Zea mays] 308 5.37752e-27
BJ312147 rwhyd24e21 2002 3' Spikelet at late flowering 242bp Contig16167 Contig16167 P06352 P06352 P06352 P06352 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome F10A5.19 [Arabidopsis thaliana] 107 0.00110518
BJ306645 rwhyd4j09 2002 3' Spikelet at late flowering 600bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome unknown [Zea mays] 616 1.90005e-62
BJ310962 rwhyd9k06 2002 3' Spikelet at late flowering 614bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome histone H3.2 [Arabidopsis thaliana] 506 1.59255e-56
BJ314627 whyf13i15 2002 5' Spikelet at early flowering 530bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein [Vitis vinifera] 679 6.85105e-70
BJ320115 rwhyf13i15 2002 3' Spikelet at early flowering 647bp Contig16167 Contig16167 P59169 P59169 P59169 P59169 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein [Vitis vinifera] 670 1.25414e-68
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