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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

List

*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 40
First Previous 1-40 Next Last All
Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
CJ627123 whcs10e17 2003 5' Callus 683bp Wh_CSEC_all.Contig1417 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 9.12652e-68
CJ518282 rwhcs10e17 2003 3' Callus 648bp Wh_CSEC_all.Contig1417 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 8.1291e-68
CJ518433 rwhcs10n08 2003 3' Callus 578bp Wh_CSEC_all.Contig1417 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 634 1.42953e-64
CJ530832 rwhec16e13 2003 3' Dormant seed with cold treatment after water absorption 663bp Wh_EMC_all.Contig1820 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 8.562e-68
CJ646493 whei5a16 2003 5' Dormant seed with water absorption after breaking 461bp Wh_EMI_all.Contig1861 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       unknown [Zea mays] 588 1.84422e-59
CJ642781 whei10h16 2003 5' Dormant seed with water absorption after breaking 531bp Wh_EMI_all.Contig1861 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 648 2.69409e-66
CJ538186 rwhei4p14 2003 3' Dormant seed with water absorption after breaking 687bp Wh_EMI_all.Contig1861 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 9.22061e-68
CJ538205 rwhei5a16 2003 3' Dormant seed with water absorption after breaking 677bp Wh_EMI_all.Contig1861 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 8.93835e-68
CJ534447 rwhei10h16 2003 3' Dormant seed with water absorption after breaking 722bp Wh_EMI_all.Contig1861 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 1.0208e-67
CJ652120 whem7m05 2003 5' Dormant seed with water absorption 580bp Wh_EM_all.Contig2131 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 650 2.02543e-66
CJ652593 whem9j11 2003 5' Dormant seed with water absorption 497bp Wh_EM_all.Contig2131 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 624 1.31993e-63
CJ650031 whem19d11 2003 5' Dormant seed with water absorption 586bp Wh_EM_all.Contig2131 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 6.39163e-68
CJ543443 rwhem5c01 2003 3' Dormant seed with water absorption 682bp Wh_EM_all.Contig2131 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 9.12652e-68
CJ544188 rwhem7m05 2003 3' Dormant seed with water absorption 678bp Wh_EM_all.Contig2131 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 8.93835e-68
CJ544682 rwhem9j11 2003 3' Dormant seed with water absorption 670bp Wh_EM_all.Contig2131 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 8.75017e-68
CJ541856 rwhem19d11 2003 3' Dormant seed with water absorption 639bp Wh_EM_all.Contig2131 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 7.84552e-68
CJ652943 whgc11g18 2003 5' Anther at meiosis of DT4B CS wheat 647bp Wh_GCPCDAM_all.Contig1376 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 8.1291e-68
CJ545048 rwhgc11g18 2003 3' Anther at meiosis of DT4B CS wheat 626bp Wh_GCPCDAM_all.Contig1376 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 7.46743e-68
CJ660045 whhg2i06 2003 5' Anther at meiosis of MT4B CS wheat 630bp Wh_HGCPCDAM_all.Contig1458 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 7.56195e-68
CJ672523 whms10e05 2003 5' Seed DPA5 of DT3DL CS wheat 464bp Wh_MS_all.Contig2485 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 659 1.07398e-67
CJ677182 whms7m07 2003 5' Seed DPA5 of DT3DL CS wheat 753bp Wh_MS_all.Contig2485 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 1.11445e-67
CJ675643 whms20p18 2003 5' Seed DPA5 of DT3DL CS wheat 650bp Wh_MS_all.Contig2485 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 8.22362e-68
CJ570280 rwhms7m07 2003 3' Seed DPA5 of DT3DL CS wheat 708bp Wh_MS_all.Contig2485 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 9.87923e-68
CJ566547 rwhms13p16 2003 3' Seed DPA5 of DT3DL CS wheat 687bp Wh_MS_all.Contig2485 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 9.3147e-68
CJ568718 rwhms20p18 2003 3' Seed DPA5 of DT3DL CS wheat 621bp Wh_MS_all.Contig2485 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 7.40695e-68
CJ679082 whok15b05 2003 5' Seed DPA5 761bp Wh_OKCS_all.Contig1677 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 1.14255e-67
CJ574138 rwhok2f09 2003 3' Seed DPA5 648bp Wh_OKCS_all.Contig1677 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 664 6.29661e-68
CJ572261 rwhok15b05 2003 3' Seed DPA5 725bp Wh_OKCS_all.Contig1677 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 1.03016e-67
CJ689209 whrd17b05 2003 5' Root of dessiccated seed 692bp Wh_RDr_all.Contig809 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 9.40879e-68
CJ582763 rwhrd17b05 2003 3' Root of dessiccated seed 660bp Wh_RDr_all.Contig809 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 8.60172e-68
CJ695623 whsc20k21 2003 5' Shoot grown with cold treatment 344bp Wh_SHC_all.Contig605 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       unknown [Zea mays] 303 2.04357e-26
CJ589502 rwhsc20k21 2003 3' Shoot grown with cold treatment 642bp Wh_SHC_all.Contig605 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 7.94005e-68
CJ702352 whsd8n15 2003 5' Shoot grown with dessication 679bp Wh_SHDr_all.Contig1509 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 9.03243e-68
CJ702353 whsd8n17 2003 5' Shoot grown with dessication 663bp Wh_SHDr_all.Contig1509 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 8.60172e-68
CJ596568 rwhsd8n17 2003 3' Shoot grown with dessication 657bp Wh_SHDr_all.Contig1509 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 8.41267e-68
CJ601348 rwhv16n7j08 2003 3' Shoot grown under cold condition for 16days 683bp rwhv16n7j08 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 9.12652e-68
CJ729824 whvs6k16 2003 5' Liquid cultured tissue 720bp Wh_VSCB_all.Contig2129 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 1.0208e-67
CJ726162 whvs12o24 2003 5' Liquid cultured tissue 663bp Wh_VSCB_all.Contig2129 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 643 1.79357e-65
CJ626124 rwhvs6k16 2003 3' Liquid cultured tissue 688bp Wh_VSCB_all.Contig2129 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 663 9.3147e-68
CJ622268 rwhvs12o24 2003 3' Liquid cultured tissue 618bp Wh_VSCB_all.Contig2129 MUGEST2003_all.Contig24778 MUGEST2003_all.Contig24778       retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa (japonica cultivar-group)] 648 4.01222e-66
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