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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

List

*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 493
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Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
whca_20027_e06f 2012 5' 595bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 362 4.75826e-98
whca_20027_e06r 2012 3' 708bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 353 2.58045e-95
whca_20075_e17r 2012 3' 56bp Contig6445       PREDICTED:chlorophylla-bbindingproteinCP26,chloroplastic-like[Brachypodiumdistachyon] 44 0.00772667
whf_24062_l22f 2012 5' Spike at flowering date 547bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 368 3.91081e-100
whhg_11045_c10f 2012 5' Anther at meiosis of MT4B CS wheat 524bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 349 2.16484e-94
whhg_11045_c10r 2012 3' Anther at meiosis of MT4B CS wheat 686bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 385 7.43713e-105
whhg_5061_c13f 2012 5' Anther at meiosis of MT4B CS wheat 636bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 420 1.32592e-115
whhg_5061_c13r 2012 3' Anther at meiosis of MT4B CS wheat 688bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 385 7.43713e-105
whkp_4046_c11f 2012 5' Shoot grown under continuous light 679bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 460 1.77958e-127
whkp_4046_c11r 2012 3' Shoot grown under continuous light 713bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 346 3.17085e-93
whkp_17025_h06f 2012 5' Shoot grown under continuous light 721bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 418 8.83243e-115
whkp_17025_h06r 2012 3' Shoot grown under continuous light 445bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 236 1.92587e-60
whkp_10039_j09f 2012 5' Shoot grown under continuous light 709bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 488 6.78018e-136
whkp_10039_j09r 2012 3' Shoot grown under continuous light 643bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 318 7.28288e-85
whkp_3065_p17f 2012 5' Shoot grown under continuous light 684bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 463 1.64533e-128
whkp_3065_p17r 2012 3' Shoot grown under continuous light 730bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 364 1.19267e-98
whkv_14047_a10f 2012 5' Shoot grown with continuous light after cold treatment 682bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 454 1.2895e-125
whkv_14047_a10r 2012 3' Shoot grown with continuous light after cold treatment 709bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 401 1.40939e-109
whkv_8047_a10r 2012 3' Shoot grown with continuous light after cold treatment 171bp Contig6445       unknown[Zeamays] 35 6.43667
whkv_2039_j10f 2012 5' Shoot grown with continuous light after cold treatment 681bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 451 8.26647e-125
whkv_2039_j10r 2012 3' Shoot grown with continuous light after cold treatment 666bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 367 1.96866e-99
whkv_3055_j13f 2012 5' Shoot grown with continuous light after cold treatment 693bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 460 1.42314e-127
whkv_3055_j13r 2012 3' Shoot grown with continuous light after cold treatment 670bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 370 1.79262e-100
whkv_11005_k01f 2012 5' Shoot grown with continuous light after cold treatment 708bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 469 3.22665e-130
whkv_11005_k01r 2012 3' Shoot grown with continuous light after cold treatment 736bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 410 2.49871e-112
whkv_15004_n04f 2012 5' Shoot grown with continuous light after cold treatment 338bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 229 3.01475e-58
whkv_15004_n04r 2012 3' Shoot grown with continuous light after cold treatment 658bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 309 4.75824e-82
whkv_20020_n08f 2012 5' Shoot grown with continuous light after cold treatment 678bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 452 6.25909e-125
whkv_20020_n08r 2012 3' Shoot grown with continuous light after cold treatment 669bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 370 1.80129e-100
whkv_14033_o10r 2012 3' Shoot grown with continuous light after cold treatment 402bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 221 6.37848e-56
whms_15063_a14f 2012 5' Seed DPA5 of DT3DL CS wheat 540bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 373 2.041e-101
whms_15063_a14r 2012 3' Seed DPA5 of DT3DL CS wheat 571bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 301 8.87749e-80
whms_18045_d09f 2012 5' Seed DPA5 of DT3DL CS wheat 694bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 462 4.94329e-128
whms_18045_d09r 2012 3' Seed DPA5 of DT3DL CS wheat 335bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 122 5.21006e-26
whpc_7029_c06f 2012 5' Anther at meiosis 754bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 500 1.95608e-139
whpc_7029_c06r 2012 3' Anther at meiosis 699bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 395 7.49922e-108
whpc_7077_c17f 2012 5' Anther at meiosis 641bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 427 1.89885e-117
whpc_7077_c17r 2012 3' Anther at meiosis 499bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 337 7.86683e-91
whpc_17055_i14f 2012 5' Anther at meiosis 679bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 452 6.25909e-125
whpc_17055_i14r 2012 3' Anther at meiosis 664bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 366 2.54126e-99
whpc_7068_m20f 2012 5' Anther at meiosis 792bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 497 1.38348e-138
whpc_7068_m20r 2012 3' Anther at meiosis 725bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 401 1.47341e-109
whpc_4050_p16f 2012 5' Anther at meiosis 713bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 473 2.93361e-131
whpc_4050_p16r 2012 3' Anther at meiosis 671bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 318 8.08413e-85
whsc_5030_c07f 2012 5' Shoot grown with cold treatment 217bp Contig6445            
whsc_5030_c07r 2012 3' Shoot grown with cold treatment 192bp Contig6445       unknown[Zeamays] 48 0.00074739
whsh_4001_a01f 2012 5' - 167bp Contig6445            
whsh_4001_a01r 2012 3' - 154bp Contig6445            
whsh_3009_c13f 2012 5' - 163bp Contig6445            
whsh_3009_c13r 2012 3' - 115bp Contig6445            
whsh_16051_e04r 2012 3' - 153bp Contig6445            
whsh_18072_n11f 2012 5' - 168bp Contig6445            
whsh_18072_n11r 2012 3' - 113bp Contig6445            
whsh_5088_n24r 2012 3' - 92bp Contig6445            
whsh_15015_o07f 2012 5' - 88bp Contig6445            
whsh_15015_o07r 2012 3' - 121bp Contig6445            
whsh_2015_o19f 2012 5' - 119bp Contig6445            
whsh_2015_o19r 2012 3' - 103bp Contig6445            
whsp_8029_c05f 2012 5' 560bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 376 1.58261e-102
whsp_8029_c05r 2012 3' 661bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 369 5.06022e-100
whsp_20077_d18f 2012 5' 545bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 368 3.91081e-100
whsp_14076_f20f 2012 5' 562bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 362 4.03391e-98
whsp_14076_f20r 2012 3' 555bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 291 8.42084e-77
whsp_20058_h16f 2012 5' 547bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 368 3.91081e-100
whsp_20058_h16r 2012 3' 487bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 166 2.44634e-39
whsp_13056_j16f 2012 5' 516bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 349 1.58792e-94
whsp_13056_j16r 2012 3' 591bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 318 6.03319e-85
whv_165079_a17f 2012 5' Shoot grown under cold condition for 16days 686bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 466 2.53838e-129
whv_165079_a17r 2012 3' Shoot grown under cold condition for 16days 674bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 353 2.29374e-95
whv_1620064_b16f 2012 5' Shoot grown under cold condition for 16days 673bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 444 1.27577e-122
whv_1620064_b16r 2012 3' Shoot grown under cold condition for 16days 552bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 239 2.90766e-61
whv_164045_c09f 2012 5' Shoot grown under cold condition for 16days 658bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 265 7.87956e-69
whv_164045_c09r 2012 3' Shoot grown under cold condition for 16days 636bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 296 4.92564e-78
whv_167045_d09f 2012 5' Shoot grown under cold condition for 16days 647bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 430 1.34871e-118
whv_167045_d09r 2012 3' Shoot grown under cold condition for 16days 649bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 333 3.82739e-89
whv_1613010_g03f 2012 5' Shoot grown under cold condition for 16days 534bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 233 2.41889e-59
whv_1613010_g03r 2012 3' Shoot grown under cold condition for 16days 482bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 242 3.43361e-62
whv_163057_g13f 2012 5' Shoot grown under cold condition for 16days 192bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 131 8.76744e-29
whv_166026_h07f 2012 5' Shoot grown under cold condition for 16days 723bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 453 1.91543e-125
whv_166026_h07r 2012 3' Shoot grown under cold condition for 16days 627bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 321 1.39889e-85
whv_165042_h12f 2012 5' Shoot grown under cold condition for 16days 700bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 465 4.56514e-129
whv_165042_h12r 2012 3' Shoot grown under cold condition for 16days 667bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 370 1.80129e-100
whv_1618053_k13f 2012 5' Shoot grown under cold condition for 16days 561bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 370 1.13418e-100
whv_1618053_k13r 2012 3' Shoot grown under cold condition for 16days 542bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 279 4.09463e-73
whv_168005_l01f 2012 5' Shoot grown under cold condition for 16days 650bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 433 2.75154e-119
whv_168005_l01r 2012 3' Shoot grown under cold condition for 16days 685bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 333 2.56799e-89
whv_1618054_l16f 2012 5' Shoot grown under cold condition for 16days 351bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 249 3.74837e-64
whv_168020_m08f 2012 5' Shoot grown under cold condition for 16days 637bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 418 6.66703e-115
whv_168020_m08r 2012 3' Shoot grown under cold condition for 16days 690bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 336 3.06645e-90
whv_167036_m12f 2012 5' Shoot grown under cold condition for 16days 735bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 465 5.05827e-129
whv_1611051_m14f 2012 5' Shoot grown under cold condition for 16days 610bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 377 1.51145e-102
whv_1611051_m14r 2012 3' Shoot grown under cold condition for 16days 356bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 130 1.92809e-28
whv_162034_o12r 2012 3' Shoot grown under cold condition for 16days 439bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 210 1.11059e-52
whv_1616050_o15f 2012 5' Shoot grown under cold condition for 16days 563bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 370 1.15518e-100
whv_1616050_o15r 2012 3' Shoot grown under cold condition for 16days 478bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 237 1.11456e-60
whv3_20096_b24f 2012 5' Shoot grown under cold condition for 3days 389bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 274 1.06928e-71
whv3_20096_b24r 2012 3' Shoot grown under cold condition for 3days 256bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 173 2.63237e-41
whv3_8028_e07f 2012 5' Shoot grown under cold condition for 3days 647bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 430 1.34871e-118
whv3_8028_e07r 2012 3' Shoot grown under cold condition for 3days 618bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 285 6.24915e-75
whv3_19025_g06f 2012 5' Shoot grown under cold condition for 3days 678bp Contig6445       PrecursorofCP29,corechlorophylla/bbinding(CAB)proteinofphotosystemII(PSII)[Hordeumvulgaresubsp.vulgare] 452 6.25909e-125
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