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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

List

*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 84
First Previous 1-84 Next Last All
Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
whcs_16084_m23f 2012 5' Callus 676bp Contig6061       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 452 3.62819e-125
whdl_1017_a02f 2012 5' Crown of seedling 401bp Contig6061       elongationfactor1alpha[Hordeumbrevisubulatum] 269 2.05077e-70
whdl_8033_a03f 2012 5' Crown of seedling 288bp Contig6061       elongationfactor1alpha[Hordeumbrevisubulatum] 196 2.90667e-48
whdl_25041_c21f 2012 5' Crown of seedling 496bp Contig6061       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 339 2.07981e-91
whdl_18091_g12f 2012 5' Crown of seedling 419bp Contig6061       elongationfactor1alpha[Hordeumbrevisubulatum] 283 1.38278e-74
whdl_8043_g21f 2012 5' Crown of seedling 440bp Contig6061       elongationfactor1alpha[Hordeumbrevisubulatum] 300 1.38597e-79
whdp_12014_d03f 2012 5' Seed DPA20 545bp Contig6061       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 370 1.02916e-100
whe_1049_a22f 2012 5' Seed DPA10 358bp Contig6061       elongationfactor1-alpha[Deschampsiaantarctica] 234 9.44389e-60
whe_21057_c10f 2012 5' Seed DPA10 541bp Contig6061       elongationfactor1alpha[Hordeumbrevisubulatum] 363 1.26403e-98
whe_7044_h15f 2012 5' Seed DPA10 401bp Contig6061       elongationfactor1-alpha[Deschampsiaantarctica] 258 4.72779e-67
whe_17030_l14f 2012 5' Seed DPA10 265bp Contig6061       elongationfactor1alpha[Hordeumbrevisubulatum] 181 9.5991e-44
whei_20056_i15f 2012 5' Dormant seed with water absorption after breaking 432bp Contig6061       elongationfactor1-alpha[Deschampsiaantarctica] 254 6.76387e-66
whei_2040_j12f 2012 5' Dormant seed with water absorption after breaking 569bp Contig6061       elongationfactor1alpha[Hordeumbrevisubulatum] 321 6.23594e-86
whei_5071_j18f 2012 5' Dormant seed with water absorption after breaking 483bp Contig6061       elongationfactor1alpha[Hordeumbrevisubulatum] 325 3.08404e-87
whem_16047_b10r 2012 3' Dormant seed with water absorption 131bp Contig6061       elongationfactor-1alpha,partial[Triticumaestivum] 88 6.40548e-16
whf_25067_e11f 2012 5' Spike at flowering date 512bp Contig6061       elongationfactor1-alpha[Deschampsiaantarctica] 333 1.1489e-89
whf_13084_f06f 2012 5' Spike at flowering date 567bp Contig6061       elongationfactor1alpha[Steviarebaudiana] 339 2.22334e-91
whf_22036_f21f 2012 5' Spike at flowering date 448bp Contig6061       elongationfactor1alpha[Hordeumbrevisubulatum] 304 7.52075e-81
whf_11097_n12f 2012 5' Spike at flowering date 404bp Contig6061       elongationfactor1-alpha[Deschampsiaantarctica] 256 1.78922e-66
whf_15063_o10f 2012 5' Spike at flowering date 547bp Contig6061       elongationfactor1-alpha[Deschampsiaantarctica] 333 1.39418e-89
whh_22036_f03f 2012 5' Spike at heading date 545bp Contig6061       elongationfactor1-alpha[Deschampsiaantarctica] 331 6.91925e-89
whhg_12006_l04f 2012 5' Anther at meiosis of MT4B CS wheat 540bp Contig6061       elongationfactor1alpha[Steviarebaudiana] 359 3.04987e-97
whms_9017_p05f 2012 5' Seed DPA5 of DT3DL CS wheat 594bp Contig6061       elongationfactor1alpha[Steviarebaudiana] 356 1.99913e-96
whoh_5067_b17f 2012 5' Pistil at heading date 438bp Contig6061       elongationfactor1-alpha[Deschampsiaantarctica] 258 4.64441e-67
whoh_23084_f24f 2012 5' Pistil at heading date 161bp Contig6061       elongationfactor1alpha[Hordeumbrevisubulatum] 113 2.45219e-23
whok_15096_b23f 2012 5' Seed DPA5 667bp Contig6061       elongationfactor1alpha[Steviarebaudiana] 409 4.57004e-112
whok_15096_b24f 2012 5' Seed DPA5 544bp Contig6061       elongationfactor1alpha[Hordeumbrevisubulatum] 355 3.44228e-96
whok_17094_d24f 2012 5' Seed DPA5 662bp Contig6061       elongationfactor1alpha[Steviarebaudiana] 409 4.46498e-112
whok_3010_h04f 2012 5' Seed DPA5 737bp Contig6061       elongationfactor1alpha[Steviarebaudiana] 445 9.23973e-123
whr_1052_e22f 2012 5' Root 386bp Contig6061       elongationfactor1-alpha[Deschampsiaantarctica] 260 1.60428e-67
whr_12084_f24f 2012 5' Root 546bp Contig6061       elongationfactor1-alpha[Deschampsiaantarctica] 333 1.39418e-89
whr_10032_o14f 2012 5' Root 276bp Contig6061       elongationfactor1alpha[Hordeumbrevisubulatum] 187 1.3207e-45
whrd_6032_b08f 2012 5' Root of dessiccated seed 592bp Contig6061       translationelongationfactor1alpha[Actaearacemosa] 354 7.47799e-96
whrd_14058_h15f 2012 5' Root of dessiccated seed 643bp Contig6061       elongationfactor1alpha[Steviarebaudiana] 390 1.99482e-106
whrd_2070_l19f 2012 5' Root of dessiccated seed 591bp Contig6061       translationelongationfactor1alpha[Actaearacemosa] 354 7.47799e-96
whrd_13086_l24f 2012 5' Root of dessiccated seed 519bp Contig6061       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 351 5.59072e-95
whsc_4091_e21f 2012 5' Shoot grown with cold treatment 667bp Contig6061       elongationfactor1alpha[Steviarebaudiana] 411 1.20264e-112
whsc_14089_g21f 2012 5' Shoot grown with cold treatment 567bp Contig6061       elongationfactor1alpha[Hordeumbrevisubulatum] 378 7.36715e-103
whsc_17037_l10f 2012 5' Shoot grown with cold treatment 554bp Contig6061       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 373 2.20065e-101
whsc_1085_l21f 2012 5' Shoot grown with cold treatment 683bp Contig6061       elongationfactor1alpha[Hordeumbrevisubulatum] 456 3.39343e-126
whsl_4036_e03f 2012 5' Seed DPA30 325bp Contig6061       elongationfactor1alpha[Hordeumbrevisubulatum] 216 2.69129e-54
whsl_5036_e03f 2012 5' Seed DPA30 89bp Contig6061       unknown[Medicagotruncatula] 62 4.9154e-08
whsl_22012_h01f 2012 5' Seed DPA30 531bp Contig6061       elongationfactor-1alpha,partial[Triticumaestivum] 255 5.94412e-66
whsl_9044_h03f 2012 5' Seed DPA30 382bp Contig6061       elongationfactor1-alpha[Deschampsiaantarctica] 258 4.6865e-67
whsl_11045_k09f 2012 5' Seed DPA30 415bp Contig6061       elongationfactor1-alpha[Deschampsiaantarctica] 260 9.33165e-68
whsl_31029_k14f 2012 5' Seed DPA30 493bp Contig6061       elongationfactor1alpha[Hordeumbrevisubulatum] 332 3.3511e-89
whsl_9046_l15f 2012 5' Seed DPA30 583bp Contig6061       elongationfactor1-alpha[Deschampsiaantarctica] 333 1.69906e-89
whvd_19083_m22f 2012 5' Shoot grown with dessication 661bp Contig6061       elongationfactor1alpha[Hordeumbrevisubulatum] 448 5.08496e-124
whvh_7045_c09f 2012 5' Shoot with heat shock treatment 687bp Contig6061       elongationfactor1alpha[Steviarebaudiana] 429 3.43869e-118
whxa_15030_c07f 2012 5' Root 632bp Contig6061       elongationfactor1alpha[Arummaculatum] 419 2.91497e-115
whxa_14044_f12f 2012 5' Root 383bp Contig6061       elongationfactor1-alpha[Deschampsiaantarctica] 251 7.48212e-65
whxa_12089_h22f 2012 5' Root 349bp Contig6061       elongationfactor1alpha[Hordeumbrevisubulatum] 231 8.11924e-59
whxa_18052_m16f 2012 5' Root 537bp Contig6061       elongationfactor1-alpha[Deschampsiaantarctica] 333 1.37221e-89
whxa_12068_n20f 2012 5' Root 269bp Contig6061       Elongationfactor1-alpha[Medicagotruncatula] 145 4.43804e-33
whxc_27064_b16f 2012 5' Root, treated at 50 microM Al for 6h 295bp Contig6061       elongationfactor-1alpha,partial[Triticumaestivum] 192 3.17912e-47
whxc_12086_k24f 2012 5' Root, treated at 50 microM Al for 6h 561bp Contig6061       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 381 8.39174e-104
whxc_16002_o04f 2012 5' Root, treated at 50 microM Al for 6h 522bp Contig6061       elongationfactor1alpha[Hordeumbrevisubulatum] 346 1.79002e-93
whxd_34072_j20f 2012 5' Root, treated at 50 microM Al for 6h 544bp Contig6061       elongationfactor1-alpha[Deschampsiaantarctica] 332 4.07569e-89
whxf_6037_k10f 2012 5' Seedling, infected with leaf rust 592bp Contig6061       translationelongationfactor1alpha[Actaearacemosa] 354 7.47799e-96
whxg_33076_f20f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 325bp Contig6061       elongationfactor1alpha[Hordeumbrevisubulatum] 165 4.17137e-39
whxh_34091_f22f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 577bp Contig6061       elongationfactor1alpha[Hordeumbrevisubulatum] 383 2.36069e-104
HX015459 whxj_11087_i21f 2012 5' Roots, two-week old seedlings treated with 150-mM NaCl for 6h (22 16L-8D) 256bp Contig6061       elongationfactor-1alpha,partial[Triticumaestivum] 175 4.07528e-42
HX033439 whxl_8012_f03f 2012 5' Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22 16L-8D) 425bp Contig6061       elongationfactor1-alpha[Deschampsiaantarctica] 251 7.54175e-65
HX037013 whxl_16070_k19f 2012 5' Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22 16L-8D) 340bp Contig6061       elongationfactor1-alpha[Deschampsiaantarctica] 193 2.39428e-47
HX037014 whxl_17070_k19f 2012 5' Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22 16L-8D) 77bp Contig6061       elongationfactor1alpha[Arummaculatum] 54 1.03702e-05
HX038528 whxl_11004_n03f 2012 5' Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22 16L-8D) 416bp Contig6061       elongationfactor1-alpha[Deschampsiaantarctica] 244 9.03844e-63
HX047104 whxm_9021_l06f 2012 5' Shoots, two-week old seedlings treated with 150-mM NaCl for 24h (22 16L-8D) 170bp Contig6061       Elongationfactor1-alpha[Medicagotruncatula] 81 1.33592e-13
HX049666 whxm_7033_p10f 2012 5' Shoots, two-week old seedlings treated with 150-mM NaCl for 24h (22 16L-8D) 376bp Contig6061       elongationfactor1-alpha[Deschampsiaantarctica] 218 7.10359e-55
HX073626 whxo_11014_c04f 2012 5' Leaves, seedling were infercted with blast strain Pr48 for 4 days (23 ) 592bp Contig6061       elongationfactor1alpha[Steviarebaudiana] 359 3.96517e-97
HX088276 whxp_17061_c14f 2012 5' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23 ) 613bp Contig6061       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 414 1.13214e-113
HX088277 whxp_18061_c14f 2012 5' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23 ) 599bp Contig6061       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 405 3.79322e-111
HX112974 whxq_11044_f12f 2012 5' Leaves, seedling were infercted with blast strain Pr58 for 4 days (27 ) 546bp Contig6061       elongationfactor1-alpha[Deschampsiaantarctica] 333 1.39418e-89
HX141176 whxr_12068_n20f 2012 5' Roots, 18 day old plants were grown hydroponically 729bp Contig6061       elongationfactor1alpha[Steviarebaudiana] 459 4.60288e-127
HX149979 whxs_17028_f08f 2012 5' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 733bp Contig6061       elongationfactor1alpha[Steviarebaudiana] 459 4.69056e-127
HX158545 whxs_12035_m09f 2012 5' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 772bp Contig6061       elongationfactor1alpha[Steviarebaudiana] 481 1.26497e-133
HX184551 whxu_24063_b13f 2012 5' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 591bp Contig6061       elongationfactor1alpha[Steviarebaudiana] 358 5.26087e-97
HX184573 whxu_24063_b13r 2012 3' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 801bp Contig6061       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 406 3.2888e-111
whyd_3003_e01f 2012 5' Spikelet at late flowering 467bp Contig6061       elongationfactor1-alpha[Deschampsiaantarctica] 258 4.73473e-67
whyd_10027_g14f 2012 5' Spikelet at late flowering 247bp Contig6061       elongationfactor1alpha[Hordeumbrevisubulatum] 163 2.03724e-38
whyd_2044_h09f 2012 5' Spikelet at late flowering 509bp Contig6061       elongationfactor1alpha[Hordeumbrevisubulatum] 342 3.24544e-92
whyd_12054_j22f 2012 5' Spikelet at late flowering 577bp Contig6061       elongationfactor1-alpha[Deschampsiaantarctica] 331 8.29183e-89
whyd_24013_k13f 2012 5' Spikelet at late flowering 512bp Contig6061       elongationfactor1alpha[Hordeumbrevisubulatum] 343 1.45e-92
whyd_27031_l08f 2012 5' Spikelet at late flowering 438bp Contig6061       elongationfactor1-alpha[Deschampsiaantarctica] 255 5.135e-66
whyd_19023_m08f 2012 5' Spikelet at late flowering 489bp Contig6061       elongationfactor1-alpha[Deschampsiaantarctica] 326 2.41253e-87
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