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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

List

*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 144
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Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
whcs_14060_f15r 2012 3' Callus 749bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 318 1.03568e-84
whcs_4056_i15f 2012 5' Callus 213bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 124 1.36792e-26
whdp_17014_d03f 2012 5' Seed DPA20 585bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 333 1.72738e-89
whdp_17014_d03r 2012 3' Seed DPA20 588bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 123 4.70679e-26
whei_9035_n09r 2012 3' Dormant seed with water absorption after breaking 449bp Contig5005       hypotheticalproteinOsJ_12490[OryzasativaJaponicaGroup] 225 3.38482e-57
whem_14028_f07r 2012 3' Dormant seed with water absorption 619bp Contig5005       hypotheticalproteinOsJ_12490[OryzasativaJaponicaGroup] 260 1.64833e-67
whem_11059_f14f 2012 5' Dormant seed with water absorption 478bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 297 1.17997e-78
whem_11059_f14r 2012 3' Dormant seed with water absorption 619bp Contig5005       hypotheticalproteinOsJ_12490[OryzasativaJaponicaGroup] 237 2.58482e-60
whem_20072_j19f 2012 5' Dormant seed with water absorption 499bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 299 1.81781e-79
whem_20072_j19r 2012 3' Dormant seed with water absorption 635bp Contig5005       hypotheticalproteinOsJ_12490[OryzasativaJaponicaGroup] 245 9.97097e-63
whf_3036_f09f 2012 5' Spike at flowering date 496bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 267 1.00905e-69
whf_3036_f09r 2012 3' Spike at flowering date 411bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 98 1.05492e-18
whf_8064_p10f 2012 5' Spike at flowering date 649bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 340 2.42729e-91
whf_8064_p10r 2012 3' Spike at flowering date 480bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 199 3.34854e-49
whhg_4063_a13f 2012 5' Anther at meiosis of MT4B CS wheat 668bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 370 1.80129e-100
whhg_4063_a13r 2012 3' Anther at meiosis of MT4B CS wheat 725bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 314 1.8137e-83
whhg_18021_k05f 2012 5' Anther at meiosis of MT4B CS wheat 692bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 366 4.77064e-99
whhg_18021_k05r 2012 3' Anther at meiosis of MT4B CS wheat 674bp Contig5005       hypotheticalproteinOsJ_12490[OryzasativaJaponicaGroup] 282 6.49411e-74
whhg_18021_k06f 2012 5' Anther at meiosis of MT4B CS wheat 334bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 200 1.157e-49
whhg_18021_k06r 2012 3' Anther at meiosis of MT4B CS wheat 289bp Contig5005       hypotheticalproteinOsJ_12490[OryzasativaJaponicaGroup] 178 8.162e-43
whhg_18069_k17f 2012 5' Anther at meiosis of MT4B CS wheat 127bp Contig5005       ArabidopsisproteintargetedtomitochondriaproteinsAt5g10860[SaccharumhybridcultivarR570] 80 2.28522e-13
whms_6008_i04f 2012 5' Seed DPA5 of DT3DL CS wheat 592bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 322 5.45679e-86
whms_6008_i04r 2012 3' Seed DPA5 of DT3DL CS wheat 646bp Contig5005       hypotheticalproteinOsJ_12490[OryzasativaJaponicaGroup] 245 1.03646e-62
whms_16006_k04f 2012 5' Seed DPA5 of DT3DL CS wheat 599bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 335 6.29609e-90
whms_16006_k04r 2012 3' Seed DPA5 of DT3DL CS wheat 671bp Contig5005       hypotheticalproteinOsJ_12490[OryzasativaJaponicaGroup] 271 1.48012e-70
whoh_20052_e04f 2012 5' Pistil at heading date 407bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 232 3.59871e-59
whoh_20052_e04r 2012 3' Pistil at heading date 540bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 177 1.67789e-42
whoh_19004_e13r 2012 3' Pistil at heading date 430bp Contig5005       hypotheticalproteinOsJ_12490[OryzasativaJaponicaGroup] 242 4.55619e-62
whoh_23031_o20f 2012 5' Pistil at heading date 511bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 230 1.37624e-58
whoh_23031_o20r 2012 3' Pistil at heading date 236bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 59 4.1859e-07
whoh_24096_p24f 2012 5' Pistil at heading date 437bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 236 2.4684e-60
whoh_24096_p24r 2012 3' Pistil at heading date 489bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 99 2.81198e-19
whpc_6013_c01f 2012 5' Anther at meiosis 734bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 370 2.19406e-100
whpc_6013_c01r 2012 3' Anther at meiosis 749bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 312 5.68299e-83
whr_25002_a13r 2012 3' Root 69bp Contig5005       unknown[Lotusjaponicus] 48 0.000892972
whr_18094_k18f 2012 5' Root 540bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 316 1.73584e-84
whr_18094_k18r 2012 3' Root 587bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 333 2.29302e-89
whrd_12005_l01f 2012 5' Root of dessiccated seed 622bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 338 1.0909e-90
whrd_12005_l01r 2012 3' Root of dessiccated seed 618bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 142 8.66483e-32
whrd_18033_p10f 2012 5' Root of dessiccated seed 599bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 335 6.29609e-90
whsd_15092_f23f 2012 5' Shoot grown with dessication 521bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 292 2.34871e-77
whsd_15092_f23r 2012 3' Shoot grown with dessication 548bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 106 2.82844e-21
whsl_23085_i12r 2012 3' Seed DPA30 445bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 267 1.01882e-69
whsp_10057_h13f 2012 5' 596bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 331 9.13507e-89
whsp_10057_h13r 2012 3' 742bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 339 7.20667e-91
whsp_17056_j16f 2012 5' 480bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 289 2.46039e-76
whsp_17056_j16r 2012 3' 618bp Contig5005       hypotheticalproteinOsJ_12490[OryzasativaJaponicaGroup] 245 9.3598e-63
whva_10005_i07f 2012 5' Shoot with ABA treatment 479bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 271 6.93371e-71
whva_10005_i07r 2012 3' Shoot with ABA treatment 479bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 142 3.71945e-32
whvd_15062_c15f 2012 5' Shoot grown with dessication 698bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 366 4.87214e-99
whvd_15062_c15r 2012 3' Shoot grown with dessication 665bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 229 6.40684e-58
whvd_15062_c16f 2012 5' Shoot grown with dessication 475bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 295 4.5041e-78
whvd_15062_c16r 2012 3' Shoot grown with dessication 619bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 199 5.88986e-49
whvd_12022_l07f 2012 5' Shoot grown with dessication 686bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 370 1.89565e-100
whvd_12022_l07r 2012 3' Shoot grown with dessication 628bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 224 2.35876e-56
whxa_24048_a11f 2012 5' Root 593bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 340 1.93632e-91
whxa_24048_a11r 2012 3' Root 583bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 222 7.32504e-56
whxa_15029_c06f 2012 5' Root 592bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 340 1.93632e-91
whxa_16029_c06f 2012 5' Root 564bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 331 1.01434e-88
whxa_15029_c06r 2012 3' Root 719bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 302 9.13575e-80
whxa_16029_c06r 2012 3' Root 736bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 297 2.36052e-78
whxa_12045_d09f 2012 5' Root 350bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 185 5.08962e-45
whxa_20089_h21f 2012 5' Root 593bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 322 5.45679e-86
whxa_20089_h21r 2012 3' Root 629bp Contig5005       hypotheticalproteinOsJ_12490[OryzasativaJaponicaGroup] 239 4.15396e-61
whxa_23001_o01f 2012 5' Root 622bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 184 1.98833e-44
whxa_23001_o01r 2012 3' Root 564bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 193 3.30107e-47
whxa_11033_o09f 2012 5' Root 330bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 203 1.79174e-50
whxa_11033_o09r 2012 3' Root 667bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 285 9.953e-75
whxb_32053_l13f 2012 5' Root 577bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 322 5.03048e-86
whxb_32053_l13r 2012 3' Root 626bp Contig5005       hypotheticalproteinOsJ_12490[OryzasativaJaponicaGroup] 245 9.75529e-63
whxb_25035_m10f 2012 5' Root 317bp Contig5005       hypotheticalproteinOsJ_12490[OryzasativaJaponicaGroup] 202 3.10222e-50
whxb_25035_m10r 2012 3' Root 623bp Contig5005       hypotheticalproteinOsJ_12490[OryzasativaJaponicaGroup] 239 4.04319e-61
whxb_8036_n12f 2012 5' Root 423bp Contig5005       ArabidopsisproteintargetedtomitochondriaproteinsAt5g10860[SaccharumhybridcultivarR570] 83 2.09135e-14
whxb_8036_n12r 2012 3' Root 392bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 99 3.59492e-19
whxb_3084_n24r 2012 3' Root 277bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 41 0.15287
whxc_19022_k08f 2012 5' Root, treated at 50 microM Al for 6h 552bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 101 1.2121e-19
whxc_19022_k08r 2012 3' Root, treated at 50 microM Al for 6h 502bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 112 5.35069e-23
whxd_27014_c04f 2012 5' Root, treated at 50 microM Al for 6h 389bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 190 1.55482e-46
whxd_27014_c04r 2012 3' Root, treated at 50 microM Al for 6h 582bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 220 2.09632e-55
whxd_10043_f10f 2012 5' Root, treated at 50 microM Al for 6h 591bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 222 7.68529e-56
whxd_10043_f10r 2012 3' Root, treated at 50 microM Al for 6h 605bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 233 2.65939e-59
whxf_3080_a20f 2012 5' Seedling, infected with leaf rust 613bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 333 1.94461e-89
whxf_4080_a20f 2012 5' Seedling, infected with leaf rust 563bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 322 4.71178e-86
whxf_3080_a20r 2012 3' Seedling, infected with leaf rust 553bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 229 3.85424e-58
whxf_4080_a20r 2012 3' Seedling, infected with leaf rust 561bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 220 1.89568e-55
whxf_5080_a20r 2012 3' Seedling, infected with leaf rust 160bp Contig5005            
whxg_22036_m12f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 60bp Contig5005       unnamedproteinproduct[Vitisvinifera] 48 0.000737673
whxg_22036_m12r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 217bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 125 6.11989e-27
whxg_18083_n21f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 514bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 286 2.15612e-75
whxg_18083_n21r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 621bp Contig5005       hypotheticalproteinOsJ_12490[OryzasativaJaponicaGroup] 245 9.49163e-63
whxh_31031_a06f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 594bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 306 4.04684e-81
whxh_31031_a06r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 588bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 165 1.08007e-38
whxh_30041_g09f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 576bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 340 1.75479e-91
whxh_30041_g09r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 619bp Contig5005       hypotheticalproteinOsJ_12490[OryzasativaJaponicaGroup] 245 9.49163e-63
whxh_31006_k04f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 582bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 307 1.30395e-81
whxh_31006_k04r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 654bp Contig5005       hypotheticalproteinOsJ_12490[OryzasativaJaponicaGroup] 265 7.69195e-69
HX012195 whxj_3077_d17f 2012 5' Roots, two-week old seedlings treated with 150-mM NaCl for 6h (22℃ 16L-8D) 462bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 249 2.80925e-64
HX012196 whxj_4077_d17f 2012 5' Roots, two-week old seedlings treated with 150-mM NaCl for 6h (22℃ 16L-8D) 49bp Contig5005       unnamedproteinproduct[Vitisvinifera] 42 0.0445181
HX016607 whxj_18069_k17r 2012 3' Roots, two-week old seedlings treated with 150-mM NaCl for 6h (22℃ 16L-8D) 362bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 96 3.9984e-18
HX020147 whxk_7048_a12f 2012 5' Shoots, two-week old seedlings treated with 150-mM NaCl for 6h (22℃ 16L-8D) 377bp Contig5005       PREDICTED:CBSdomain-containingproteinCBSX3,mitochondrial-like[Brachypodiumdistachyon] 186 2.97959e-45
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