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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

List
*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 64
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Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
whe_13068_e05f 2012 5' Seed DPA10 547bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 306 2.43228e-81
whei_5051_n13r 2012 3' Dormant seed with water absorption after breaking 49bp Contig34129       probableUbiquitinconjugatingenzymeE2-16kDa[Ustilagohordei] 37 1.34259
whkv_19057_h13r 2012 3' Shoot grown with continuous light after cold treatment 148bp Contig34129            
whkv_16023_i06f 2012 5' Shoot grown with continuous light after cold treatment 695bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 315 7.47292e-84
whkv_16023_i06r 2012 3' Shoot grown with continuous light after cold treatment 662bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 315 6.71862e-84
whms_14060_e15f 2012 5' Seed DPA5 of DT3DL CS wheat 209bp Contig34129       unnamedproteinproduct[Tetraodonnigroviridis] 35 8.38458
whms_14060_e15r 2012 3' Seed DPA5 of DT3DL CS wheat 195bp Contig34129       unnamedproteinproduct[Tetraodonnigroviridis] 35 8.49569
whpc_3004_n03f 2012 5' Anther at meiosis 758bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 315 9.00244e-84
whpc_3004_n03r 2012 3' Anther at meiosis 714bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 315 7.82821e-84
whvd_15013_c01f 2012 5' Shoot grown with dessication 796bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 315 9.81562e-84
whvd_15013_c01r 2012 3' Shoot grown with dessication 670bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 315 6.87671e-84
whvh_19052_m16f 2012 5' Shoot with heat shock treatment 806bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 315 1.01272e-83
whxa_10052_m15f 2012 5' Root 52bp Contig34129       ubiquitin-conjugatingenzyme[CoccomyxasubellipsoideaC-169] 39 0.288558
whxa_10052_m15r 2012 3' Root 40bp Contig34129            
whxa_10084_m23f 2012 5' Root 379bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 259 2.75848e-67
whxa_10084_m23r 2012 3' Root 587bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 289 3.79719e-76
whxb_21040_i12f 2012 5' Root 442bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 111 1.22562e-22
whxb_21040_i12r 2012 3' Root 404bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 126 2.1382e-27
whxc_24031_b05f 2012 5' Root, treated at 50 microM Al for 6h 366bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 192 3.1266e-47
whxc_16077_d17f 2012 5' Root, treated at 50 microM Al for 6h 481bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 272 3.1124e-71
whxc_16077_d17r 2012 3' Root, treated at 50 microM Al for 6h 599bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 283 2.174e-74
whxd_4044_e12f 2012 5' Root, treated at 50 microM Al for 6h 605bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 315 5.32133e-84
whxd_4044_e12r 2012 3' Root, treated at 50 microM Al for 6h 603bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 262 6.87798e-68
whxd_8084_m23f 2012 5' Root, treated at 50 microM Al for 6h 561bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 315 4.32991e-84
whxd_8084_m23r 2012 3' Root, treated at 50 microM Al for 6h 585bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 289 3.79719e-76
whxe_24048_a12f 2012 5' Seedling, infected with leaf rust 494bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 315 3.23097e-84
whxe_24048_a12r 2012 3' Seedling, infected with leaf rust 414bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 152 3.594e-35
whxe_25064_a15f 2012 5' Seedling, infected with leaf rust 283bp Contig34129       putativemembraneproteinofExoQfamily,involvedinexopolysaccharideproduction[Vibriosp.AND4] 36 4.86532
whxe_25064_a15r 2012 3' Seedling, infected with leaf rust 258bp Contig34129       ubiquitinconjugatingenzymeE2[Lupinusalbus] 36 5.02235
whxg_11010_h03f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 530bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 315 3.62537e-84
whxg_11010_h03r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 623bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 289 4.44958e-76
whxg_15024_j08f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 594bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 315 5.18721e-84
whxg_15024_j08r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 615bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 298 7.03291e-79
whxg_13050_p15r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 256bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 190 1.59331e-46
whxh_39021_l05f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 562bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 315 4.41009e-84
whxh_40021_l05f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 110bp Contig34129            
whxh_39021_l05r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 545bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 104 1.37566e-20
whxh_11051_m13f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 590bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 315 5.0276e-84
whxh_11051_m13r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 593bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 258 9.67693e-67
whxh_27018_o08f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 575bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 315 4.62858e-84
whxh_28018_o08f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 572bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 315 4.54878e-84
whxh_27018_o08r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 568bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 266 4.06081e-69
whxh_28018_o08r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 631bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 297 1.28532e-78
whxh_30018_o08r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 77bp Contig34129            
HX003099 whxi_13011_f02f 2012 5' Two-week old seedlingsi22Ž 16L-8Dj 343bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 192 3.11513e-47
HX003114 whxi_13011_f02r 2012 3' Two-week old seedlingsi22Ž 16L-8Dj 385bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 126 2.11969e-27
HX019122 whxj_14066_o19f 2012 5' Roots, two-week old seedlings treated with 150-mM NaCl for 6h (22Ž 16L-8D) 267bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 120 1.53426e-25
HX031560 whxl_2014_c04r 2012 3' Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 410bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 152 3.60892e-35
HX050477 whxn_8032_a08f 2012 5' Leaves, plant was grown at constant 23Ž 661bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 308 8.21296e-82
HX050508 whxn_8032_a08r 2012 3' Leaves, plant was grown at constant 23Ž 670bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 308 8.36576e-82
HX087581 whxp_17013_c02f 2012 5' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 628bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 315 5.95672e-84
HX087614 whxp_17013_c02r 2012 3' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 672bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 315 6.92229e-84
HX087615 whxp_18013_c02r 2012 3' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 62bp Contig34129            
HX149023 whxs_2059_e13f 2012 5' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 739bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 313 4.23476e-83
HX149048 whxs_2059_e13r 2012 3' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 688bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 315 7.3156e-84
HX150991 whxs_4010_g04f 2012 5' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 775bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 315 9.34821e-84
HX151018 whxs_4010_g04r 2012 3' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 767bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 315 9.11451e-84
whxw_4052_n16f 2012 5' Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 681bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 315 7.07961e-84
whxw_4052_n16r 2012 3' Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 768bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 315 9.11451e-84
whxw_5066_p20f 2012 5' Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 698bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 315 7.55158e-84
whxx_1016_a03f 2012 5' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 765bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 315 9.11451e-84
whyd_10024_n02f 2012 5' Spikelet at late flowering 347bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 247 8.38263e-64
whyd_10024_n02r 2012 3' Spikelet at late flowering 364bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 98 8.02501e-19
whyd_25063_o04r 2012 3' Spikelet at late flowering 458bp Contig34129       PREDICTED:ubiquitin-conjugatingenzymeE2-17kDa-likeisoform1[Brachypodiumdistachyon] 160 1.31985e-37
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