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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

List

*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 54
First Previous 1-54 Next Last All
Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
whca_20048_a11f 2012 5' 415bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 181 7.22488e-44
whca_20048_a11r 2012 3' 690bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 226 4.51726e-57
whcs_5015_a01r 2012 3' Callus 655bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 226 4.00793e-57
whdl_23034_a21f 2012 5' Crown of seedling 465bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 194 1.10146e-47
whdl_23034_a21r 2012 3' Crown of seedling 486bp Contig3301       retrotransposonprotein,putative,Ty1-copiasubclass,expressed[OryzasativaJaponicaGroup] 136 3.54071e-30
whdl_25077_k23f 2012 5' Crown of seedling 409bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 192 4.11003e-47
whdl_25077_k23r 2012 3' Crown of seedling 465bp Contig3301       retrotransposonprotein,putative,Ty1-copiasubclass,expressed[OryzasativaJaponicaGroup] 120 2.02135e-25
whdl_7031_o14f 2012 5' Crown of seedling 407bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 183 1.46785e-44
whdl_18063_o22f 2012 5' Crown of seedling 426bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 194 1.09409e-47
whdl_18063_o22r 2012 3' Crown of seedling 506bp Contig3301       retrotransposonprotein,putative,Ty1-copiasubclass,expressed[OryzasativaJaponicaGroup] 136 2.7173e-30
whe_3047_o21r 2012 3' Seed DPA10 573bp Contig3301       retrotransposonprotein,putative,Ty1-copiasubclass,expressed[OryzasativaJaponicaGroup] 182 4.60184e-44
whei_11081_p22f 2012 5' Dormant seed with water absorption after breaking 403bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 192 4.14401e-47
whei_11081_p22r 2012 3' Dormant seed with water absorption after breaking 571bp Contig3301       retrotransposonprotein,putative,Ty1-copiasubclass,expressed[OryzasativaJaponicaGroup] 177 2.52511e-42
whhg_14081_o21f 2012 5' Anther at meiosis of MT4B CS wheat 457bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 217 1.18823e-54
whhg_14081_o21r 2012 3' Anther at meiosis of MT4B CS wheat 668bp Contig3301       retrotransposonprotein,putative,Ty1-copiasubclass,expressed[OryzasativaJaponicaGroup] 193 5.1474e-47
whms_6079_a17f 2012 5' Seed DPA5 of DT3DL CS wheat 549bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 226 2.49825e-57
whms_6079_a17r 2012 3' Seed DPA5 of DT3DL CS wheat 554bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 212 4.97123e-53
whms_9010_g04f 2012 5' Seed DPA5 of DT3DL CS wheat 283bp Contig3301       hypotheticalproteinPalpr_0450[PaludibacterpropionicigenesWB4] 36 4.86532
whms_9010_g04r 2012 3' Seed DPA5 of DT3DL CS wheat 257bp Contig3301            
whoh_21082_b24r 2012 3' Pistil at heading date 492bp Contig3301       retrotransposonprotein,putative,Ty1-copiasubclass,expressed[OryzasativaJaponicaGroup] 136 3.5246e-30
whoh_19042_c21r 2012 3' Pistil at heading date 145bp Contig3301            
whr_13026_d08r 2012 3' Root 441bp Contig3301       retrotransposonprotein,putative,Ty1-copiasubclass,expressed[OryzasativaJaponicaGroup] 113 3.13816e-23
whsc_16056_i15r 2012 3' Shoot grown with cold treatment 598bp Contig3301       retrotransposonprotein,putative,Ty1-copiasubclass,expressed[OryzasativaJaponicaGroup] 161 9.58578e-38
whsd_19012_f03f 2012 5' Shoot grown with dessication 577bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 226 2.87642e-57
whsd_19012_f03r 2012 3' Shoot grown with dessication 600bp Contig3301       retrotransposonprotein,putative,Ty1-copiasubclass,expressed[OryzasativaJaponicaGroup] 181 1.54295e-43
whsd_19012_f04f 2012 5' Shoot grown with dessication 82bp Contig3301       Os01g0916600[OryzasativaJaponicaGroup] 44 0.013934
whsl_10063_o16r 2012 3' Seed DPA30 488bp Contig3301       retrotransposonprotein,putative,Ty1-copiasubclass,expressed[OryzasativaJaponicaGroup] 136 3.54071e-30
whxc_39016_a04f 2012 5' Root, treated at 50 microM Al for 6h 251bp Contig3301       ccmCgeneproduct(mitochondrion)[Boeahygrometrica] 35 8.31004
whxc_39014_c03f 2012 5' Root, treated at 50 microM Al for 6h 582bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 226 2.97393e-57
whxc_39014_c03r 2012 3' Root, treated at 50 microM Al for 6h 649bp Contig3301       retrotransposonprotein,putative,Ty1-copiasubclass,expressed[OryzasativaJaponicaGroup] 193 4.79241e-47
whxc_6092_f23f 2012 5' Root, treated at 50 microM Al for 6h 599bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 215 7.2708e-54
whxc_6092_f23r 2012 3' Root, treated at 50 microM Al for 6h 598bp Contig3301       retrotransposonprotein,putative,Ty1-copiasubclass,expressed[OryzasativaJaponicaGroup] 182 5.2227e-44
whxc_25039_j09f 2012 5' Root, treated at 50 microM Al for 6h 360bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 171 9.78011e-41
whxd_34024_j08r 2012 3' Root, treated at 50 microM Al for 6h 160bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 63 2.91934e-08
HX073535 whxo_21013_c01f 2012 5' Leaves, seedling were infercted with blast strain Pr48 for 4 days (23℃ ) 642bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 224 1.43126e-56
HX073551 whxo_21013_c01r 2012 3' Leaves, seedling were infercted with blast strain Pr48 for 4 days (23℃ ) 568bp Contig3301       retrotransposonprotein,putative,Ty1-copiasubclass,expressed[OryzasativaJaponicaGroup] 181 1.31544e-43
HX080167 whxo_24022_k07r 2012 3' Leaves, seedling were infercted with blast strain Pr48 for 4 days (23℃ ) 286bp Contig3301       AGAP000045-PB[Anophelesgambiaestr.PEST] 39 0.348165
HX132130 whxr_26026_g08f 2012 5' Roots, 18 day old plants were grown hydroponically 693bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 226 4.51726e-57
HX132155 whxr_26026_g08r 2012 3' Roots, 18 day old plants were grown hydroponically 640bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 226 3.7182e-57
HX152216 whxs_15025_h05f 2012 5' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 683bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 226 4.3731e-57
HX152239 whxs_15025_h05r 2012 3' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 732bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 209 8.37524e-52
HX152482 whxs_27041_h10f 2012 5' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 768bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 226 5.56819e-57
HX152509 whxs_27041_h10r 2012 3' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 513bp Contig3301       retrotransposonprotein,putative,Ty1-copiasubclass,expressed[OryzasativaJaponicaGroup] 191 9.20948e-47
HX153554 whxs_16024_i08f 2012 5' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 683bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 226 4.3731e-57
HX153581 whxs_16024_i08r 2012 3' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 736bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 212 9.9867e-53
HX160969 whxs_18018_o08f 2012 5' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 747bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 226 5.30843e-57
HX160996 whxs_18018_o08r 2012 3' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 722bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 226 4.92584e-57
HX172281 whxt_3042_h11f 2012 5' Roots, 18 day old plants were grown hydroponically 741bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 226 5.21278e-57
HX172308 whxt_3042_h11r 2012 3' Roots, 18 day old plants were grown hydroponically 732bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 212 9.89337e-53
HX177648 whxt_14070_l20f 2012 5' Roots, 18 day old plants were grown hydroponically 681bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 226 4.32504e-57
HX177674 whxt_14070_l20r 2012 3' Roots, 18 day old plants were grown hydroponically 732bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 212 9.89337e-53
whyd_23009_c07f 2012 5' Spikelet at late flowering 376bp Contig3301       PREDICTED:glycine-richRNA-bindingprotein2,mitochondrial-like[Brachypodiumdistachyon] 146 2.00324e-33
whyd_23009_c07r 2012 3' Spikelet at late flowering 226bp Contig3301            
whyd_8073_c11r 2012 3' Spikelet at late flowering 473bp Contig3301       retrotransposonprotein,putative,Ty1-copiasubclass,expressed[OryzasativaJaponicaGroup] 136 3.51269e-30
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