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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

List

*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 106
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Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
whhg_2046_c12f 2012 5' Anther at meiosis of MT4B CS wheat 461bp Contig2754       chlorophylla-bbindingprotein[Triticumaestivum] 89 4.85901e-16
whhg_2046_c12r 2012 3' Anther at meiosis of MT4B CS wheat 436bp Contig2754       chlorophylla-bbindingprotein[Triticumaestivum] 104 1.12573e-20
whkp_1011_e02f 2012 5' Shoot grown under continuous light 312bp Contig2754       GI21746[Drosophilamojavensis] 36 4.88327
whkp_1011_e02r 2012 3' Shoot grown under continuous light 287bp Contig2754            
whkp_12067_n18f 2012 5' Shoot grown under continuous light 589bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 218 8.36432e-55
whkp_12067_n18r 2012 3' Shoot grown under continuous light 543bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 235 6.74863e-60
whkv_11088_i23r 2012 3' Shoot grown with continuous light after cold treatment 278bp Contig2754       PREDICTED:chlorophylla-bbindingprotein1B-21,chloroplastic-like[Brachypodiumdistachyon] 56 2.68261e-06
whkv_8001_o01r 2012 3' Shoot grown with continuous light after cold treatment 183bp Contig2754            
whok_6092_f24f 2012 5' Seed DPA5 339bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 60 1.85462e-07
whsh_5036_f21f 2012 5' - 161bp Contig2754            
whsh_5036_f21r 2012 3' - 131bp Contig2754            
whsh_8039_m21f 2012 5' - 327bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 51 0.000148627
whsh_8039_m21r 2012 3' - 268bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 51 0.000149296
whsh_10031_o20f 2012 5' - 50bp Contig2754            
whsp_18090_g24f 2012 5' 577bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 226 3.69305e-57
whsp_18090_g24r 2012 3' 549bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 246 2.28713e-63
whv_163045_d09f 2012 5' Shoot grown under cold condition for 16days 475bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 143 2.86072e-32
whv_163045_d09r 2012 3' Shoot grown under cold condition for 16days 459bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 179 3.57023e-43
whv_164072_j19f 2012 5' Shoot grown under cold condition for 16days 633bp Contig2754       chlorophylla-bbindingprotein[Triticumaestivum] 430 1.65138e-118
whv_164072_j19r 2012 3' Shoot grown under cold condition for 16days 572bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 281 9.50681e-74
whvd_3064_a15f 2012 5' Shoot grown with dessication 670bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 277 1.58138e-72
whvd_3064_a15r 2012 3' Shoot grown with dessication 530bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 230 1.17438e-58
whxe_31069_k18f 2012 5' Seedling, infected with leaf rust 236bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 82 4.61733e-14
whxf_11029_d06r 2012 3' Seedling, infected with leaf rust 74bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 49 0.000418265
whxf_35076_f20f 2012 5' Seedling, infected with leaf rust 240bp Contig2754            
whxg_8030_d08f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 471bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 310 1.35908e-82
whxg_8030_d08r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 588bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 308 6.14582e-82
whxg_21026_g07r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 634bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 306 3.64447e-81
whxg_37052_n15f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 284bp Contig2754       chlorophylla-bbindingprotein[Triticumaestivum] 203 2.3011e-50
whxg_37052_n15r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 512bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 217 1.56726e-54
whxh_15040_i11r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 446bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 160 2.29085e-37
whxh_14038_l12f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 395bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 84 1.60895e-14
whxh_14038_l12r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 383bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 99 4.75217e-19
whxh_8035_m09f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 632bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 295 6.34844e-78
whxh_9035_m09f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 309bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 82 4.56624e-14
whxh_8035_m09r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 632bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 312 3.84254e-83
whxh_9035_m09r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 326bp Contig2754       chlorophylla-bbindingprotein[Triticumaestivum] 229 3.06063e-58
HX001633 whxi_18077_c17f 2012 5' Two-week old seedlingsi22Ž 16L-8Dj 386bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 270 1.55027e-70
HX001648 whxi_18077_c17r 2012 3' Two-week old seedlingsi22Ž 16L-8Dj 404bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 125 8.12514e-27
HX002878 whxi_10075_e17f 2012 5' Two-week old seedlingsi22Ž 16L-8Dj 325bp Contig2754       chlorophylla-bbindingprotein[Triticumaestivum] 223 2.20161e-56
HX004073 whxi_10057_g13f 2012 5' Two-week old seedlingsi22Ž 16L-8Dj 281bp Contig2754       chlorophylla-bbindingprotein[Triticumaestivum] 202 3.93916e-50
HX004081 whxi_10057_g13r 2012 3' Two-week old seedlingsi22Ž 16L-8Dj 185bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 40 0.26755
HX053204 whxn_33030_c07r 2012 3' Leaves, plant was grown at constant 23Ž 360bp Contig2754       RecName:Full=Chlorophylla-bbindingprotein1B-21,chloroplastic;AltName:Full=LHCItypeICAB-1B-21;AltName:Full=LHCI-730chlorophylla/bbindingprotein;AltName:Full=Light-harvestingcomplexI21kDaprotein;Flags:Precursor 111 3.2898e-23
HX056235 whxn_4059_e13f 2012 5' Leaves, plant was grown at constant 23Ž 664bp Contig2754       RecName:Full=Chlorophylla-bbindingprotein1B-21,chloroplastic;AltName:Full=LHCItypeICAB-1B-21;AltName:Full=LHCI-730chlorophylla/bbindingprotein;AltName:Full=Light-harvestingcomplexI21kDaprotein;Flags:Precursor 467 1.05782e-129
HX056263 whxn_4059_e13r 2012 3' Leaves, plant was grown at constant 23Ž 646bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 299 6.12472e-79
HX057237 whxn_4028_f07f 2012 5' Leaves, plant was grown at constant 23Ž 721bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 331 1.85453e-88
HX057270 whxn_4028_f07r 2012 3' Leaves, plant was grown at constant 23Ž 684bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 338 1.34686e-90
HX057349 whxn_19043_f09f 2012 5' Leaves, plant was grown at constant 23Ž 296bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 57 1.59619e-06
HX058393 whxn_2010_g03r 2012 3' Leaves, plant was grown at constant 23Ž 288bp Contig2754       GH11992[Drosophilagrimshawi] 39 0.591751
HX059871 whxn_4025_h05f 2012 5' Leaves, plant was grown at constant 23Ž 719bp Contig2754       RecName:Full=Chlorophylla-bbindingprotein1B-21,chloroplastic;AltName:Full=LHCItypeICAB-1B-21;AltName:Full=LHCI-730chlorophylla/bbindingprotein;AltName:Full=Light-harvestingcomplexI21kDaprotein;Flags:Precursor 504 1.58297e-140
HX059903 whxn_4025_h05r 2012 3' Leaves, plant was grown at constant 23Ž 749bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 364 2.14954e-98
HX062139 whxn_12087_i21f 2012 5' Leaves, plant was grown at constant 23Ž 461bp Contig2754       chlorophylla-bbindingprotein[Triticumaestivum] 322 3.41027e-86
HX062166 whxn_12087_i21r 2012 3' Leaves, plant was grown at constant 23Ž 659bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 306 4.02809e-81
HX063138 whxn_1055_j14r 2012 3' Leaves, plant was grown at constant 23Ž 691bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 366 4.77064e-99
HX066491 whxn_16003_m02f 2012 5' Leaves, plant was grown at constant 23Ž 225bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 113 1.89573e-23
HX066521 whxn_16003_m02r 2012 3' Leaves, plant was grown at constant 23Ž 386bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 130 1.91718e-28
HX071296 whxn_32049_p14f 2012 5' Leaves, plant was grown at constant 23Ž 226bp Contig2754            
HX071327 whxn_32049_p14r 2012 3' Leaves, plant was grown at constant 23Ž 215bp Contig2754            
HX072686 whxo_12015_b01f 2012 5' Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 693bp Contig2754       chlorophylla-bbindingprotein[Triticumaestivum] 470 2.34578e-130
HX072701 whxo_12015_b01r 2012 3' Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 614bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 309 3.98428e-82
HX074386 whxo_6014_d03f 2012 5' Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 683bp Contig2754       chlorophylla-bbindingprotein[Triticumaestivum] 460 1.37772e-127
HX074406 whxo_6014_d03r 2012 3' Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 644bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 297 2.2983e-78
HX082564 whxo_4020_n07f 2012 5' Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 541bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 200 2.36793e-49
HX082580 whxo_4020_n07r 2012 3' Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 500bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 200 1.96027e-49
HX090021 whxp_32078_d20f 2012 5' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 417bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 106 3.02552e-21
HX090046 whxp_32078_d20r 2012 3' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 383bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 118 9.88592e-25
HX091169 whxp_32060_e15r 2012 3' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 515bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 217 9.41785e-55
HX094502 whxp_7009_h01f 2012 5' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 434bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 132 5.04147e-29
HX094533 whxp_7009_h01r 2012 3' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 425bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 173 1.99853e-41
HX097551 whxp_27023_j05r 2012 3' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 110bp Contig2754            
HX100337 whxp_26022_l07f 2012 5' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 585bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 303 2.50013e-80
HX100364 whxp_26022_l07r 2012 3' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 565bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 215 6.21113e-54
HX102262 whxp_38052_m16r 2012 3' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 432bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 166 3.16388e-39
HX109994 whxq_27078_c19f 2012 5' Leaves, seedling were infercted with blast strain Pr58 for 4 days (27Ž ) 578bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 354 1.19456e-95
HX110016 whxq_27078_c19r 2012 3' Leaves, seedling were infercted with blast strain Pr58 for 4 days (27Ž ) 619bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 304 9.95382e-81
HX187679 whxu_3012_e04f 2012 5' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 762bp Contig2754       chlorophylla-bbindingprotein[Triticumaestivum] 502 5.23789e-140
HX187704 whxu_3012_e04r 2012 3' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 700bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 366 4.87214e-99
HX195803 whxu_20086_k24f 2012 5' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 801bp Contig2754       RecName:Full=Chlorophylla-bbindingprotein1B-21,chloroplastic;AltName:Full=LHCItypeICAB-1B-21;AltName:Full=LHCI-730chlorophylla/bbindingprotein;AltName:Full=Light-harvestingcomplexI21kDaprotein;Flags:Precursor 430 2.77768e-118
HX195830 whxu_20086_k24r 2012 3' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 756bp Contig2754       RecName:Full=Chlorophylla-bbindingprotein1B-21,chloroplastic;AltName:Full=LHCItypeICAB-1B-21;AltName:Full=LHCI-730chlorophylla/bbindingprotein;AltName:Full=Light-harvestingcomplexI21kDaprotein;Flags:Precursor 376 4.2601e-102
whxv_9096_a24f 2012 5' Leaves, plant was grown at constant 23Ž 447bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 111 9.30366e-23
whxv_9096_a24r 2012 3' Leaves, plant was grown at constant 23Ž 378bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 115 8.43593e-24
whxv_6047_b10f 2012 5' Leaves, plant was grown at constant 23Ž 793bp Contig2754       RecName:Full=Chlorophylla-bbindingprotein1B-21,chloroplastic;AltName:Full=LHCItypeICAB-1B-21;AltName:Full=LHCI-730chlorophylla/bbindingprotein;AltName:Full=Light-harvestingcomplexI21kDaprotein;Flags:Precursor 470 1.82557e-130
whxv_6047_b10r 2012 3' Leaves, plant was grown at constant 23Ž 727bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 366 5.25264e-99
whxv_8010_g03f 2012 5' Leaves, plant was grown at constant 23Ž 775bp Contig2754       RecName:Full=Chlorophylla-bbindingprotein1B-21,chloroplastic;AltName:Full=LHCItypeICAB-1B-21;AltName:Full=LHCI-730chlorophylla/bbindingprotein;AltName:Full=Light-harvestingcomplexI21kDaprotein;Flags:Precursor 509 3.3493e-142
whxv_8010_g03r 2012 3' Leaves, plant was grown at constant 23Ž 694bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 366 4.77064e-99
whxv_4009_h02f 2012 5' Leaves, plant was grown at constant 23Ž 761bp Contig2754       chlorophylla-bbindingprotein[Triticumaestivum] 500 2.59954e-139
whxv_4009_h02r 2012 3' Leaves, plant was grown at constant 23Ž 724bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 370 3.60259e-100
whxv_6019_n06f 2012 5' Leaves, plant was grown at constant 23Ž 746bp Contig2754       chlorophylla-bbindingprotein[Triticumaestivum] 502 5.01212e-140
whxv_6019_n06r 2012 3' Leaves, plant was grown at constant 23Ž 720bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 366 5.15163e-99
whxw_8046_d12f 2012 5' Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 739bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 341 1.11183e-91
whxw_8046_d12r 2012 3' Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 719bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 366 5.15163e-99
whxw_9075_f17f 2012 5' Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 774bp Contig2754       RecName:Full=Chlorophylla-bbindingprotein1B-21,chloroplastic;AltName:Full=LHCItypeICAB-1B-21;AltName:Full=LHCI-730chlorophylla/bbindingprotein;AltName:Full=Light-harvestingcomplexI21kDaprotein;Flags:Precursor 509 4.37433e-142
whxw_9075_f17r 2012 3' Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 773bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 352 8.93747e-95
whxw_3086_k24r 2012 3' Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 173bp Contig2754            
whxx_5016_a04f 2012 5' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 680bp Contig2754       chlorophylla-bbindingprotein[Triticumaestivum] 469 2.93331e-130
whxx_5016_a04r 2012 3' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 720bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 366 5.15163e-99
whxx_5045_d10f 2012 5' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 695bp Contig2754       chlorophylla-bbindingprotein[Triticumaestivum] 475 7.36965e-132
whxx_5045_d10r 2012 3' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 691bp Contig2754       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 370 3.30377e-100
whxx_8059_f13f 2012 5' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 669bp Contig2754       chlorophylla-bbindingprotein[Triticumaestivum] 451 1.04869e-124
whxx_6083_n21f 2012 5' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 702bp Contig2754       chlorophylla-bbindingprotein[Triticumaestivum] 477 2.00063e-132
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