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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

List

*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 138
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Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
whdl_17022_j14f 2012 5' Crown of seedling 241bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 120 1.99141e-25
whdp_18014_c03f 2012 5' Seed DPA20 523bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 249 3.98203e-64
whdp_18014_c03r 2012 3' Seed DPA20 618bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 269 4.69974e-70
whdp_11030_c07f 2012 5' Seed DPA20 581bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 339 4.04406e-91
whdp_11030_c07r 2012 3' Seed DPA20 582bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 345 4.3207e-93
whdp_7018_p07r 2012 3' Seed DPA20 57bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 44 0.0131797
whe_16026_d02f 2012 5' Seed DPA10 531bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 311 9.12803e-83
whe_8091_g06f 2012 5' Seed DPA10 374bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 236 1.93001e-60
whe_8091_g06r 2012 3' Seed DPA10 424bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 196 2.20452e-48
whei_3091_f21f 2012 5' Dormant seed with water absorption after breaking 316bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 116 2.92386e-24
whei_3091_f21r 2012 3' Dormant seed with water absorption after breaking 285bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 138 5.50722e-31
whei_12088_i24f 2012 5' Dormant seed with water absorption after breaking 355bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 147 1.52418e-33
whei_12088_i24r 2012 3' Dormant seed with water absorption after breaking 442bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 167 1.07358e-39
whf_28054_j04f 2012 5' Spike at flowering date 591bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 366 3.24371e-99
whf_28055_j04r 2012 3' Spike at flowering date 466bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 280 1.51958e-73
whh_22011_g01f 2012 5' Spike at heading date 560bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 357 1.29767e-96
whh_22011_g01r 2012 3' Spike at heading date 473bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 204 8.04192e-51
whkp_5077_c18f 2012 5' Shoot grown under continuous light 658bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 271 1.85314e-70
whkp_5077_c18r 2012 3' Shoot grown under continuous light 527bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 278 4.80207e-73
whkv_19080_b20f 2012 5' Shoot grown with continuous light after cold treatment 655bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 355 5.65179e-96
whkv_19080_b20r 2012 3' Shoot grown with continuous light after cold treatment 680bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 365 5.96551e-99
whms_1026_h07f 2012 5' Seed DPA5 of DT3DL CS wheat 525bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 316 1.55503e-84
whms_1026_h07r 2012 3' Seed DPA5 of DT3DL CS wheat 355bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 108 1.02474e-21
whms_4050_o15f 2012 5' Seed DPA5 of DT3DL CS wheat 542bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 301 5.89894e-80
whms_4050_o15r 2012 3' Seed DPA5 of DT3DL CS wheat 634bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 308 7.34335e-82
whoh_9017_a20r 2012 3' Pistil at heading date 123bp Contig17555            
whoh_1067_b23f 2012 5' Pistil at heading date 551bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 349 2.55548e-94
whoh_1067_b23r 2012 3' Pistil at heading date 478bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 214 7.70176e-54
whoh_25057_c22r 2012 3' Pistil at heading date 410bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 249 3.70016e-64
whoh_2063_o22f 2012 5' Pistil at heading date 426bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 242 4.55619e-62
whoh_2063_o22r 2012 3' Pistil at heading date 399bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 189 3.5225e-46
whr_2050_b04r 2012 3' Root 60bp Contig17555            
whr_7091_d06f 2012 5' Root 510bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 297 9.1673e-79
whr_7090_d06r 2012 3' Root 236bp Contig17555       PREDICTED:phosphoglyceratekinase,cytosolic-like[Brachypodiumdistachyon] 66 2.62188e-09
whr_20029_k14f 2012 5' Root 490bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 313 1.2334e-83
whr_19030_k14r 2012 3' Root 207bp Contig17555       PREDICTED:phosphoglyceratekinase,cytosolic-like[Brachypodiumdistachyon] 47 0.00213219
whr_23056_n04r 2012 3' Root 547bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 278 5.43114e-73
whrd_13060_e16f 2012 5' Root of dessiccated seed 588bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 377 1.38469e-102
whrd_13060_e16r 2012 3' Root of dessiccated seed 635bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 310 2.52387e-82
whrd_14010_h04f 2012 5' Root of dessiccated seed 590bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 315 6.56625e-84
whrd_14010_h04r 2012 3' Root of dessiccated seed 654bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 310 2.72313e-82
whsc_7016_b03f 2012 5' Shoot grown with cold treatment 632bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 400 1.83006e-109
whsc_7016_b03r 2012 3' Shoot grown with cold treatment 619bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 310 2.40254e-82
whsc_16003_m02r 2012 3' Shoot grown with cold treatment 387bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 252 2.55098e-65
whsc_1020_n07r 2012 3' Shoot grown with cold treatment 644bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 296 3.9203e-78
whsd_16031_a05f 2012 5' Shoot grown with dessication 582bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 344 1.25713e-92
whsd_16031_a05r 2012 3' Shoot grown with dessication 581bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 263 2.15931e-68
whsd_16030_c08f 2012 5' Shoot grown with dessication 641bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 386 2.84405e-105
whsd_16030_c08r 2012 3' Shoot grown with dessication 638bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 310 2.55708e-82
whsp_20030_d08f 2012 5' 602bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 341 1.16507e-91
whsp_20030_d08r 2012 3' 561bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 317 1.16055e-84
whsp_3067_n17f 2012 5' 529bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 313 1.79925e-83
whv_1612074_g20f 2012 5' Shoot grown under cold condition for 16days 679bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 388 8.59423e-106
whv3_9014_c04f 2012 5' Shoot grown under cold condition for 3days 575bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 340 1.34359e-91
whv3_9014_c04r 2012 3' Shoot grown under cold condition for 3days 708bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 408 6.75925e-112
whva_15056_i15r 2012 3' Shoot with ABA treatment 621bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 185 1.18186e-44
whvd_14095_b21f 2012 5' Shoot grown with dessication 635bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 407 1.51704e-111
whvd_14095_b21r 2012 3' Shoot grown with dessication 647bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 299 3.59065e-79
whvh_13037_l09f 2012 5' Shoot with heat shock treatment 745bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 445 9.41084e-123
whvh_13037_l09r 2012 3' Shoot with heat shock treatment 762bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 4.9356e-98
whvh_4038_l11f 2012 5' Shoot with heat shock treatment 737bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 436 3.28629e-120
whvh_4038_l11r 2012 3' Shoot with heat shock treatment 696bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 342 5.70856e-92
whvh_1020_m08f 2012 5' Shoot with heat shock treatment 756bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 445 9.75305e-123
whvh_1020_m08r 2012 3' Shoot with heat shock treatment 699bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 315 9.96541e-84
whvs_18048_b12f 2012 5' Liquid cultured tissue 745bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 443 2.76303e-122
whvs_18048_b12r 2012 3' Liquid cultured tissue 720bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 349 4.98976e-94
whvs_18024_j07f 2012 5' Liquid cultured tissue 743bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 445 9.41084e-123
whvs_18024_j07r 2012 3' Liquid cultured tissue 703bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 351 1.63881e-94
whxa_23012_e04f 2012 5' Root 639bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 381 6.91532e-104
whxa_23012_e04r 2012 3' Root 617bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 297 2.0755e-78
whxa_29044_e12f 2012 5' Root 427bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 245 3.15526e-63
whxa_29044_e12r 2012 3' Root 380bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 143 2.88119e-32
whxa_23060_e15f 2012 5' Root 622bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 368 5.77104e-100
whxa_23060_e15r 2012 3' Root 475bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 210 1.45904e-52
whxd_22063_a13r 2012 3' Root, treated at 50 microM Al for 6h 643bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 284 2.01341e-74
whxd_23063_a13r 2012 3' Root, treated at 50 microM Al for 6h 513bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 206 2.83564e-51
whxh_12033_o09f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 207bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 103 3.28512e-20
whxh_14033_o09f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 117bp Contig17555       PREDICTED:phosphoglyceratekinase,cytosolic-like[Brachypodiumdistachyon] 70 2.38654e-10
HX001454 whxi_18045_c10f 2012 5' Two-week old seedlingsi22Ž 16L-8Dj 391bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 153 2.7398e-35
HX010438 whxj_5080_a19f 2012 5' Roots, two-week old seedlings treated with 150-mM NaCl for 6h (22Ž 16L-8D) 408bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 227 1.51196e-57
HX010453 whxj_5080_a19r 2012 3' Roots, two-week old seedlings treated with 150-mM NaCl for 6h (22Ž 16L-8D) 365bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 133 2.94001e-29
HX010455 whxj_7080_a19r 2012 3' Roots, two-week old seedlings treated with 150-mM NaCl for 6h (22Ž 16L-8D) 94bp Contig17555            
HX031391 whxl_8095_b22f 2012 5' Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 493bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 289 3.23847e-76
HX031392 whxl_9095_b22f 2012 5' Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 272bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 167 1.85372e-39
HX031404 whxl_8095_b22r 2012 3' Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 406bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 133 2.97137e-29
HX031405 whxl_9095_b22r 2012 3' Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 361bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 113 2.42012e-23
HX032252 whxl_17030_d07f 2012 5' Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 412bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 235 5.5063e-60
HX032271 whxl_17030_d07r 2012 3' Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 396bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 138 5.5043e-31
HX032464 whxl_1062_d15f 2012 5' Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 289bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 182 5.65237e-44
HX032480 whxl_1062_d15r 2012 3' Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 391bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 153 2.7398e-35
HX035566 whxl_14056_i15f 2012 5' Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 382bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 239 2.26182e-61
HX035567 whxl_15056_i15f 2012 5' Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 309bp Contig17555       PREDICTED:phosphoglyceratekinase,cytosolic-like[Brachypodiumdistachyon] 201 6.71987e-50
HX035583 whxl_14056_i15r 2012 3' Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 320bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 108 1.03607e-21
HX035584 whxl_15056_i15r 2012 3' Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 328bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 113 2.44768e-23
HX037436 whxl_13037_l10f 2012 5' Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 210bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 106 3.86778e-21
HX037449 whxl_13037_l10r 2012 3' Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 449bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 170 1.68768e-40
HX038004 whxl_19020_m07f 2012 5' Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 355bp Contig17555       RecName:Full=Phosphoglyceratekinase,cytosolic 198 5.76507e-49
HX038019 whxl_19020_m07r 2012 3' Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 386bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 133 2.95779e-29
HX038737 whxl_15036_n11r 2012 3' Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 405bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 166 3.16728e-39
HX039752 whxl_6002_p04f 2012 5' Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 442bp Contig17555       predictedprotein[Hordeumvulgaresubsp.vulgare] 219 3.19554e-55
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