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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

List
*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 89
First Previous 1-89 Next Last All
Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
whca_10036_n11f 2012 5' 562bp Contig14032       putativeelongationfactor1-alpha[Miscanthussinensis] 336 3.15316e-90
whcs_3016_a04f 2012 5' Callus 677bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 454 1.26116e-125
whcs_3016_a04r 2012 3' Callus 721bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 412 4.79946e-113
whcs_6070_k19f 2012 5' Callus 697bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 443 2.37624e-122
whcs_6070_k19r 2012 3' Callus 721bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 412 4.79946e-113
whcs_1085_l22f 2012 5' Callus 555bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 351 8.95526e-95
whcs_1085_l22r 2012 3' Callus 577bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 307 9.81759e-82
whdl_4073_c23f 2012 5' Crown of seedling 303bp Contig14032       elongationfactor1-alpha,partial[Verniciafordii] 208 7.23258e-52
whdl_19012_h07f 2012 5' Crown of seedling 476bp Contig14032       elongationfactor1alpha[Arummaculatum] 326 2.38275e-87
whdl_19012_h07r 2012 3' Crown of seedling 569bp Contig14032       PREDICTED:LOWQUALITYPROTEIN:elongationfactor1-alpha-like[Brachypodiumdistachyon] 247 2.89855e-65
whdl_24088_m06r 2012 3' Crown of seedling 523bp Contig14032       PREDICTED:LOWQUALITYPROTEIN:elongationfactor1-alpha-like[Brachypodiumdistachyon] 180 1.45104e-45
whdp_10047_b10r 2012 3' Seed DPA20 574bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 315 4.54878e-84
whe_4073_c17f 2012 5' Seed DPA10 554bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 349 2.60558e-94
whe_4073_c17r 2012 3' Seed DPA10 492bp Contig14032       PREDICTED:LOWQUALITYPROTEIN:elongationfactor1-alpha-like[Brachypodiumdistachyon] 203 1.68382e-52
whei_8061_c13r 2012 3' Dormant seed with water absorption after breaking 593bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 297 1.87983e-78
whf_23072_n17f 2012 5' Spike at flowering date 601bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 354 1.01829e-95
whf_14064_o22f 2012 5' Spike at flowering date 465bp Contig14032       elongationfactor1alpha[Arummaculatum] 315 3.26373e-84
whf_14064_o22r 2012 3' Spike at flowering date 455bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 243 2.03099e-62
whh_12067_b17r 2012 3' Spike at heading date 456bp Contig14032       PREDICTED:LOWQUALITYPROTEIN:elongationfactor1-alpha-like[Brachypodiumdistachyon] 203 1.67114e-52
whh_22048_p15f 2012 5' Spike at heading date 482bp Contig14032       elongationfactor1alpha[Arummaculatum] 317 1.0969e-84
whh_22048_p15r 2012 3' Spike at heading date 417bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 208 4.3285e-52
whhg_13076_f19f 2012 5' Anther at meiosis of MT4B CS wheat 544bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 351 8.47864e-95
whhg_13076_f19r 2012 3' Anther at meiosis of MT4B CS wheat 760bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 386 4.18891e-105
whkp_7075_e17f 2012 5' Shoot grown under continuous light 502bp Contig14032       PREDICTED:LOWQUALITYPROTEIN:elongationfactor1-alpha-like[Brachypodiumdistachyon] 225 7.6812e-59
whkv_11083_m21f 2012 5' Shoot grown with continuous light after cold treatment 724bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 489 5.3213e-136
whkv_5084_m24f 2012 5' Shoot grown with continuous light after cold treatment 363bp Contig14032       elongationfactor1alpha[Steviarebaudiana] 246 2.39222e-63
whms_7075_f17f 2012 5' Seed DPA5 of DT3DL CS wheat 570bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 380 1.92953e-103
whms_7075_f17r 2012 3' Seed DPA5 of DT3DL CS wheat 613bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 300 1.85077e-79
whpc_3065_o17f 2012 5' Anther at meiosis 452bp Contig14032       PREDICTED:LOWQUALITYPROTEIN:elongationfactor1-alpha-like[Brachypodiumdistachyon] 98 4.83537e-21
whpc_12066_p19f 2012 5' Anther at meiosis 717bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 443 2.51411e-122
whpc_12066_p19r 2012 3' Anther at meiosis 759bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 376 4.29747e-102
whrd_18095_a21f 2012 5' Root of dessiccated seed 563bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 351 9.47191e-95
whsc_2056_i16f 2012 5' Shoot grown with cold treatment 640bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 400 1.87886e-109
whsc_8022_l07f 2012 5' Shoot grown with cold treatment 611bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 396 3.19051e-108
whsd_5042_h11f 2012 5' Shoot grown with dessication 552bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 346 2.82541e-93
whsd_5042_h11r 2012 3' Shoot grown with dessication 637bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 305 6.29831e-81
whsd_2051_n13f 2012 5' Shoot grown with dessication 580bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 363 1.50763e-98
whsd_5033_o10f 2012 5' Shoot grown with dessication 528bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 353 2.00355e-95
whsd_5033_o10r 2012 3' Shoot grown with dessication 646bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 298 7.99913e-79
whsl_23025_c14f 2012 5' Seed DPA30 271bp Contig14032       elongationfactor1-alpha,partial[Verniciafordii] 188 7.77015e-46
whsl_23025_c14r 2012 3' Seed DPA30 554bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 307 8.69402e-82
whsp_9059_e14r 2012 3' 537bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 344 7.77381e-93
whsp_20010_h04f 2012 5' 612bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 406 2.36065e-111
whsp_20010_h04r 2012 3' 614bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 305 5.75329e-81
whsp_13024_j08r 2012 3' 646bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 339 3.13101e-91
whsp_18067_n18r 2012 3' 612bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 348 7.62924e-94
whv_167094_c23f 2012 5' Shoot grown under cold condition for 16days 706bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 475 5.82094e-132
whv_167094_c24f 2012 5' Shoot grown under cold condition for 16days 640bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 430 2.21429e-118
whv_1619009_g02f 2012 5' Shoot grown under cold condition for 16days 698bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 443 2.40125e-122
whv_1619009_g02r 2012 3' Shoot grown under cold condition for 16days 713bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 353 2.59392e-95
whvh_3083_n21f 2012 5' Shoot with heat shock treatment 702bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 443 2.42627e-122
whvs_16009_g01f 2012 5' Liquid cultured tissue 670bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 453 1.6179e-125
whvs_1010_g03f 2012 5' Liquid cultured tissue 651bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 277 1.47943e-72
whvs_1010_g03r 2012 3' Liquid cultured tissue 617bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 286 2.80512e-75
whvs_17084_m23r 2012 3' Liquid cultured tissue 94bp Contig14032       PREDICTED:LOWQUALITYPROTEIN:elongationfactor1-alpha-like[Brachypodiumdistachyon] 56 4.58709e-06
whxa_10095_b22f 2012 5' Root 345bp Contig14032       eukaryoticelongationfactor1-alpha[Loliumtemulentum] 229 3.09713e-58
whxa_11095_b22f 2012 5' Root 292bp Contig14032       eukaryoticelongationfactor1-alpha[Loliumtemulentum] 197 1.29539e-48
whxa_2017_o06f 2012 5' Root 551bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 346 2.82541e-93
whxb_17022_l08r 2012 3' Root 203bp Contig14032       elongationfactor1-alpha,partial[Verniciafordii] 141 1.09214e-31
whxb_17001_p02f 2012 5' Root 505bp Contig14032       eukaryoticelongationfactor1-alpha[Loliumtemulentum] 343 1.46362e-92
whxc_3091_f21f 2012 5' Root, treated at 50 microM Al for 6h 273bp Contig14032       PREDICTED:LOWQUALITYPROTEIN:elongationfactor1-alpha-like[Brachypodiumdistachyon] 43 8.22635e-05
whxc_3091_f21r 2012 3' Root, treated at 50 microM Al for 6h 249bp Contig14032       PREDICTED:LOWQUALITYPROTEIN:elongationfactor1-alpha-like[Brachypodiumdistachyon] 70 7.68227e-13
whxf_23088_i23f 2012 5' Seedling, infected with leaf rust 450bp Contig14032       eukaryoticelongationfactor1-alpha[Loliumtemulentum] 293 1.71886e-77
whxf_23088_i23r 2012 3' Seedling, infected with leaf rust 376bp Contig14032       PREDICTED:LOWQUALITYPROTEIN:elongationfactor1-alpha-like[Brachypodiumdistachyon] 146 3.02833e-35
HX002828 whxi_15060_e15f 2012 5' Two-week old seedlingsi22Ž 16L-8Dj 415bp Contig14032       putativeelongationfactor1-alpha[Miscanthussinensis] 249 3.66956e-64
HX002842 whxi_15060_e15r 2012 3' Two-week old seedlingsi22Ž 16L-8Dj 231bp Contig14032       PREDICTED:LOWQUALITYPROTEIN:elongationfactor1-alpha-like[Brachypodiumdistachyon] 128 7.38751e-28
HX014890 whxj_4090_h23f 2012 5' Roots, two-week old seedlings treated with 150-mM NaCl for 6h (22Ž 16L-8D) 364bp Contig14032       putativeelongationfactor1-alpha[Miscanthussinensis] 220 1.40571e-55
HX014891 whxj_5090_h23f 2012 5' Roots, two-week old seedlings treated with 150-mM NaCl for 6h (22Ž 16L-8D) 328bp Contig14032       putativeelongationfactor1-alpha[Miscanthussinensis] 195 4.89772e-48
HX014904 whxj_5090_h23r 2012 3' Roots, two-week old seedlings treated with 150-mM NaCl for 6h (22Ž 16L-8D) 335bp Contig14032       PREDICTED:LOWQUALITYPROTEIN:elongationfactor1-alpha-like[Brachypodiumdistachyon] 130 1.96392e-30
HX040540 whxm_9063_a13r 2012 3' Shoots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 318bp Contig14032       PREDICTED:LOWQUALITYPROTEIN:elongationfactor1-alpha-like[Brachypodiumdistachyon] 133 4.43455e-30
HX040551 whxm_9063_a14f 2012 5' Shoots, two-week old seedlings treated with 150-mM NaCl for 24h (22Ž 16L-8D) 76bp Contig14032       translationelongationfactor-1alpha,partial[Citrusmaxima] 56 3.56419e-06
HX077936 whxo_17057_h13r 2012 3' Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 374bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 166 2.45282e-39
HX085450 whxp_31063_a13f 2012 5' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 612bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 402 3.45817e-110
HX085481 whxp_31063_a13r 2012 3' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 592bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 315 5.1074e-84
HX086374 whxp_22031_b05f 2012 5' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 636bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 428 4.93292e-118
HX086402 whxp_22031_b05r 2012 3' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 507bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 254 8.94149e-66
HX152162 whxs_11010_h04f 2012 5' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 693bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 445 8.08106e-123
HX179681 whxt_19036_n12f 2012 5' Roots, 18 day old plants were grown hydroponically 112bp Contig14032       unknown[Medicagotruncatula] 77 1.97007e-12
HX188022 whxu_4044_e11f 2012 5' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 692bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 445 8.08106e-123
HX188046 whxu_4044_e11r 2012 3' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 752bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 412 5.31705e-113
HX193478 whxu_10007_j02f 2012 5' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 771bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 376 3.3599e-102
HX193501 whxu_10007_j02r 2012 3' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 727bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 383 2.4577e-104
whyd_1073_c17f 2012 5' Spikelet at late flowering 591bp Contig14032       eukaryoticelongationfactor1-alpha[Loliumtemulentum] 404 1.07482e-110
whyd_23067_e11f 2012 5' Spikelet at late flowering 487bp Contig14032       PREDICTED:elongationfactor1-alpha-likeisoform1[Glycinemax] 329 2.18204e-88
whyd_23067_e11r 2012 3' Spikelet at late flowering 485bp Contig14032       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 249 2.88279e-64
whyd_8094_l24r 2012 3' Spikelet at late flowering 503bp Contig14032       PREDICTED:LOWQUALITYPROTEIN:elongationfactor1-alpha-like[Brachypodiumdistachyon] 232 4.967e-61
whyd_26047_o09r 2012 3' Spikelet at late flowering 547bp Contig14032       PREDICTED:LOWQUALITYPROTEIN:elongationfactor1-alpha-like[Brachypodiumdistachyon] 230 1.76775e-60
whyd_29016_p07f 2012 5' Spikelet at late flowering 487bp Contig14032       PREDICTED:LOWQUALITYPROTEIN:elongationfactor1-alpha-like[Brachypodiumdistachyon] 205 3.46245e-53
whyd_29016_p07r 2012 3' Spikelet at late flowering 507bp Contig14032       PREDICTED:LOWQUALITYPROTEIN:elongationfactor1-alpha-like[Brachypodiumdistachyon] 209 3.17636e-54
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