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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

List
*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 25
First Previous 1-25 Next Last All
Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
BJ312433 whyf10b15 2002 5' Spikelet at early flowering 557bp Contig16284 Contig16284 P59258 P59258 P59258 P59258 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome unknown [Zea mays] 428 1.00503e-40
BJ312729 whyf11l14 2002 5' Spikelet at early flowering 658bp Contig16284 Contig16284       cell wall-associated hydrolase [Microscilla marina ATCC 23134] 404 3.40708e-39
BJ312796 whyf12b10 2002 5' Spikelet at early flowering 336bp Contig16284 Contig16284 P59258 P59258 P59258 P59258 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome unknown [Zea mays] 313 1.42596e-27
BJ312843 whyf12f08 2002 5' Spikelet at early flowering 678bp Contig16284 Contig16284 Q27546 GO:0016787 hydrolase activity unknown [Zea mays] 954 1.6309e-101
BJ314547 whyf13d07 2002 5' Spikelet at early flowering 534bp Contig16284 Contig16284 P17350 P17350 P17350 GO:0005194 GO:0007155 GO:0007596 cell adhesion molecule activity ,  cell adhesion ,  blood coagulation conserved hypothetical protein [Paracoccus denitrificans PD1222] 307 9.325e-27
BJ314729 whyf14a21 2002 5' Spikelet at early flowering 700bp Contig16284 Contig16284 P15978 P15978 P15978 P15978 GO:0016021 GO:0019883 GO:0019885 GO:0030106 integral to membrane ,  antigen presentation, endogenous antigen ,  antigen processing, endogenous antigen via MHC class I ,  MHC class I receptor activity conserved hypothetical protein [Magnetospirillum gryphiswaldense] 154 1.01928e-08
BJ314927 whyf15a21 2002 5' Spikelet at early flowering 451bp Contig16284 Contig16284 P15978 P15978 P15978 P15978 GO:0016021 GO:0019883 GO:0019885 GO:0030106 integral to membrane ,  antigen presentation, endogenous antigen ,  antigen processing, endogenous antigen via MHC class I ,  MHC class I receptor activity conserved hypothetical protein [Magnetospirillum gryphiswaldense] 154 3.96727e-09
BJ314961 whyf15d09 2002 5' Spikelet at early flowering 628bp Contig16284 Contig16284 P05621 P05621 P05621 P05621 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome Histone H2B.3 338 3.66891e-30
BJ314288 whyf17a21 2002 5' Spikelet at early flowering 377bp Contig16284 Contig16284 P15978 P15978 P15978 P15978 GO:0016021 GO:0019883 GO:0019885 GO:0030106 integral to membrane ,  antigen presentation, endogenous antigen ,  antigen processing, endogenous antigen via MHC class I ,  MHC class I receptor activity conserved hypothetical protein [uncultured beta proteobacterium CBNPD1 BAC clone 578] 138 2.84754e-07
BJ316091 whyf21h21 2002 5' Spikelet at early flowering 555bp Contig16284 Contig16284 P15978 P15978 P15978 P15978 GO:0016021 GO:0019883 GO:0019885 GO:0030106 integral to membrane ,  antigen presentation, endogenous antigen ,  antigen processing, endogenous antigen via MHC class I ,  MHC class I receptor activity conserved hypothetical protein [Magnetospirillum gryphiswaldense] 154 5.84616e-09
BJ317448 whyf28d06 2002 5' Spikelet at early flowering 629bp Contig16284 Contig16284 O88351 O88351 O88351 GO:0004674 GO:0005524 GO:0016740 protein serine/threonine kinase activity ,  ATP binding ,  transferase activity hypothetical protein NitaMp027 [Nicotiana tabacum] 317 9.99141e-28
BJ317542 whyf28l04 2002 5' Spikelet at early flowering 539bp Contig16284 Contig16284       conserved hypothetical protein [Aurantimonas sp. SI85-9A1] 403 2.54464e-43
BJ312329 whyf2i02 2002 5' Spikelet at early flowering 551bp Contig16284 Contig16284 Q27546 GO:0016787 hydrolase activity putative inosine-uridine preferring nucleoside hydrolase (with alternative splicing) [Oryza sativa (japonica cultivar-group)] 672 4.94066e-69
BJ312361 whyf2l04 2002 5' Spikelet at early flowering 551bp Contig16284 Contig16284 O88351 O88351 O88351 GO:0004674 GO:0005524 GO:0016740 protein serine/threonine kinase activity ,  ATP binding ,  transferase activity hypothetical protein NitaMp027 [Nicotiana tabacum] 267 4.53125e-22
BJ313221 whyf4d13 2002 5' Spikelet at early flowering 551bp Contig16284 Contig16284 Q98631 Q98631 Q98631 GO:0003968 GO:0016740 GO:0016779 RNA-directed RNA polymerase activity ,  transferase activity ,  nucleotidyltransferase activity conserved hypothetical protein [Paracoccus denitrificans PD1222] 293 4.37871e-25
BJ313506 whyf5n15 2002 5' Spikelet at early flowering 582bp Contig16284 Contig16284 P37935 P37935 P37935 P37935 GO:0003677 GO:0003677 GO:0005634 GO:0006355 DNA binding ,  DNA binding ,  nucleus ,  regulation of transcription, DNA-dependent unnamed protein product [Vitis vinifera] 97 7.87705e-07
BJ313795 whyf7i02 2002 5' Spikelet at early flowering 550bp Contig16284 Contig16284       conserved hypothetical protein [Aurantimonas sp. SI85-9A1] 404 1.1392e-44
BJ318127 rwhyf10b15 2002 3' Spikelet at early flowering 492bp Contig16284 Contig16284 P59258 P59258 P59258 P59258 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome unknown [Zea mays] 428 6.70394e-41
BJ318536 rwhyf12b10 2002 3' Spikelet at early flowering 287bp Contig16284 Contig16284 P59258 P59258 P59258 P59258 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome unknown [Zea mays] 313 1.46463e-27
BJ320215 rwhyf14a21 2002 3' Spikelet at early flowering 715bp Contig16284 Contig16284 P15978 P15978 P15978 P15978 GO:0016021 GO:0019883 GO:0019885 GO:0030106 integral to membrane ,  antigen presentation, endogenous antigen ,  antigen processing, endogenous antigen via MHC class I ,  MHC class I receptor activity unknown [Zea mays] 180 1.01847e-11
BJ320439 rwhyf15d09 2002 3' Spikelet at early flowering 635bp Contig16284 Contig16284 P30755 P30755 P30755 P30755 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome hypothetical protein A55_B0061 [Vibrio cholerae 1587] 145 9.01343e-08
BJ321582 rwhyf21h21 2002 3' Spikelet at early flowering 734bp Contig16284 Contig16284       unnamed protein product [Vitis vinifera] 97 1.28743e-06
BJ317817 rwhyf2i02 2002 3' Spikelet at early flowering 682bp Contig16284 Contig16284 P59258 P59258 P59258 P59258 GO:0000786 GO:0003677 GO:0005634 GO:0005694 nucleosome ,  DNA binding ,  nucleus ,  chromosome pyrimidine-specific ribonucleoside hydrolase riha [Oryza sativa (indica cultivar-group)] 529 3.15133e-52
BJ317849 rwhyf2l04 2002 3' Spikelet at early flowering 378bp Contig16284 Contig16284       hypothetical protein RT0201 [Rickettsia typhi str. Wilmington] 146 2.69115e-12
BJ318962 rwhyf4d13 2002 3' Spikelet at early flowering 640bp Contig16284 Contig16284       conserved hypothetical protein [Aurantimonas sp. SI85-9A1] 370 1.34391e-40
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