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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

List
*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 55
First Previous 1-55 Next Last All
Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
whdp_14067_n17f 2012 5' Seed DPA20 532bp Contig18377       unknown[Medicagotruncatula] 340 1.05238e-91
whdp_14067_n17r 2012 3' Seed DPA20 549bp Contig18377       PREDICTED:polyubiquitin11-like[Brachypodiumdistachyon] 264 1.38434e-68
whei_6086_k24f 2012 5' Dormant seed with water absorption after breaking 484bp Contig18377       PREDICTED:polyubiquitin11-like[Brachypodiumdistachyon] 184 1.13889e-44
whei_6086_k24r 2012 3' Dormant seed with water absorption after breaking 491bp Contig18377       PREDICTED:polyubiquitin11-like[Brachypodiumdistachyon] 221 6.3788e-56
whei_13085_l21f 2012 5' Dormant seed with water absorption after breaking 528bp Contig18377       PREDICTED:polyubiquitin11-like[Brachypodiumdistachyon] 248 5.32164e-64
whei_13085_l21r 2012 3' Dormant seed with water absorption after breaking 573bp Contig18377       PREDICTED:polyubiquitin11-like[Brachypodiumdistachyon] 277 1.39686e-72
whem_3095_b22f 2012 5' Dormant seed with water absorption 422bp Contig18377       Ubiquitin-likeprotein[Medicagotruncatula] 249 2.20354e-64
whem_3095_b22r 2012 3' Dormant seed with water absorption 370bp Contig18377       PREDICTED:polyubiquitin11-like[Brachypodiumdistachyon] 160 1.35123e-37
whem_19094_d23f 2012 5' Dormant seed with water absorption 623bp Contig18377       PREDICTED:polyubiquitin11-like[Brachypodiumdistachyon] 330 2.27466e-88
whem_19094_d23r 2012 3' Dormant seed with water absorption 567bp Contig18377       PREDICTED:polyubiquitin11-like[Brachypodiumdistachyon] 292 4.07071e-77
whem_14011_f01f 2012 5' Dormant seed with water absorption 340bp Contig18377       unknown[Medicagotruncatula] 220 1.07225e-55
whem_14011_f01r 2012 3' Dormant seed with water absorption 568bp Contig18377       PREDICTED:polyubiquitin11-like[Brachypodiumdistachyon] 274 1.49116e-71
whem_15072_j20f 2012 5' Dormant seed with water absorption 533bp Contig18377       Ubiquitin-likeprotein[Medicagotruncatula] 318 5.71743e-85
whem_15072_j20r 2012 3' Dormant seed with water absorption 576bp Contig18377       PREDICTED:polyubiquitin11-like[Brachypodiumdistachyon] 294 8.60062e-78
whem_8083_n22f 2012 5' Dormant seed with water absorption 522bp Contig18377       unknown[Medicagotruncatula] 331 4.56258e-89
whem_8083_n22r 2012 3' Dormant seed with water absorption 597bp Contig18377       PREDICTED:polyubiquitin11-like[Brachypodiumdistachyon] 292 4.70252e-77
whpc_18093_d21f 2012 5' Anther at meiosis 695bp Contig18377       polyubiquitin,partial[Wolffiaaustraliana] 442 6.9138e-122
whpc_18093_d21r 2012 3' Anther at meiosis 651bp Contig18377       PREDICTED:polyubiquitin11-like[Brachypodiumdistachyon] 328 7.39861e-88
whr_11049_a04f 2012 5' Root 475bp Contig18377       Ubiquitin-likeprotein[Medicagotruncatula] 280 1.1532e-73
whr_11049_a04r 2012 3' Root 431bp Contig18377       PREDICTED:polyubiquitin11-like[Brachypodiumdistachyon] 212 5.02783e-53
whr_12011_g19f 2012 5' Root 442bp Contig18377       unknown[Medicagotruncatula] 282 2.9906e-74
whr_12011_g19r 2012 3' Root 408bp Contig18377       PREDICTED:polyubiquitin11-like[Brachypodiumdistachyon] 200 1.16035e-49
whrd_16040_j12f 2012 5' Root of dessiccated seed 540bp Contig18377       Ubiquitin-likeprotein[Medicagotruncatula] 333 2.34063e-89
whrd_16040_j12r 2012 3' Root of dessiccated seed 620bp Contig18377       PREDICTED:polyubiquitin11-like[Brachypodiumdistachyon] 311 8.25742e-83
whrd_20036_n11r 2012 3' Root of dessiccated seed 351bp Contig18377       PREDICTED:polyubiquitin11-like[Brachypodiumdistachyon] 133 2.29525e-29
whsd_8012_f03f 2012 5' Shoot grown with dessication 561bp Contig18377       Ubiquitin-likeprotein[Medicagotruncatula] 333 2.00666e-89
whsd_20055_j13f 2012 5' Shoot grown with dessication 536bp Contig18377       Ubiquitin-likeprotein[Medicagotruncatula] 326 2.80162e-87
whsd_20055_j13r 2012 3' Shoot grown with dessication 298bp Contig18377       unknown[Medicagotruncatula] 197 1.28603e-48
whsl_12056_m04f 2012 5' Seed DPA30 466bp Contig18377       Ubiquitin-likeprotein[Medicagotruncatula] 277 9.84964e-73
whsl_12056_m04r 2012 3' Seed DPA30 509bp Contig18377       PREDICTED:polyubiquitin11-like[Brachypodiumdistachyon] 259 2.76661e-67
whv3_16007_j02f 2012 5' Shoot grown under cold condition for 3days 613bp Contig18377       Ubiquitin-likeprotein[Medicagotruncatula] 355 6.33157e-96
whva_6056_n16r 2012 3' Shoot with ABA treatment 100bp Contig18377       ubiquitin/40sribosomalproteinS27afusion[StereumhirsutumFP-91666SS1] 64 9.8165e-09
whva_19034_o11f 2012 5' Shoot with ABA treatment 583bp Contig18377       Ubiquitin-likeprotein[Medicagotruncatula] 353 1.58659e-95
whva_19034_o11r 2012 3' Shoot with ABA treatment 590bp Contig18377       PREDICTED:polyubiquitin11-like[Brachypodiumdistachyon] 290 1.73197e-76
whva_19082_o24r 2012 3' Shoot with ABA treatment 47bp Contig18377       PREDICTED:uncharacterizedproteinLOC754856[Strongylocentrotuspurpuratus] 36 2.99098
whvs_10015_b01f 2012 5' Liquid cultured tissue 550bp Contig18377       Ubiquitin-likeprotein[Medicagotruncatula] 332 4.22202e-89
whvs_10015_b01r 2012 3' Liquid cultured tissue 564bp Contig18377       PREDICTED:polyubiquitin11-like[Brachypodiumdistachyon] 272 4.28144e-71
whvs_10061_d13f 2012 5' Liquid cultured tissue 560bp Contig18377       Ubiquitin-likeprotein[Medicagotruncatula] 333 2.00666e-89
whvs_10061_d13r 2012 3' Liquid cultured tissue 551bp Contig18377       PREDICTED:polyubiquitin11-like[Brachypodiumdistachyon] 265 4.85307e-69
whxd_7069_l17f 2012 5' Root, treated at 50 microM Al for 6h 49bp Contig18377       ubiquitin/40sribosomalproteinS27afusion[StereumhirsutumFP-91666SS1] 34 7.10742
HX013815 whxj_15026_g07f 2012 5' Roots, two-week old seedlings treated with 150-mM NaCl for 6h (22℃ 16L-8D) 406bp Contig18377       unknown[Medicagotruncatula] 263 1.90378e-68
HX013826 whxj_15026_g07r 2012 3' Roots, two-week old seedlings treated with 150-mM NaCl for 6h (22℃ 16L-8D) 319bp Contig18377       PREDICTED:polyubiquitin11-like[Brachypodiumdistachyon] 137 1.22558e-30
HX013839 whxj_15026_g08f 2012 5' Roots, two-week old seedlings treated with 150-mM NaCl for 6h (22℃ 16L-8D) 465bp Contig18377       unknown[Medicagotruncatula] 298 5.41603e-79
HX013853 whxj_15026_g08r 2012 3' Roots, two-week old seedlings treated with 150-mM NaCl for 6h (22℃ 16L-8D) 282bp Contig18377       PREDICTED:polyubiquitin11-like[Brachypodiumdistachyon] 118 9.73531e-25
HX017826 whxj_9051_m14f 2012 5' Roots, two-week old seedlings treated with 150-mM NaCl for 6h (22℃ 16L-8D) 293bp Contig18377       Ubiquitin-likeprotein[Medicagotruncatula] 172 4.46252e-41
HX018112 whxj_9003_n01f 2012 5' Roots, two-week old seedlings treated with 150-mM NaCl for 6h (22℃ 16L-8D) 325bp Contig18377       Ubiquitin-likeprotein[Medicagotruncatula] 207 1.24548e-51
HX018125 whxj_9003_n01r 2012 3' Roots, two-week old seedlings treated with 150-mM NaCl for 6h (22℃ 16L-8D) 308bp Contig18377       PREDICTED:polyubiquitin11-like[Brachypodiumdistachyon] 135 5.9361e-30
HX033906 whxl_6091_f21f 2012 5' Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22℃ 16L-8D) 316bp Contig18377       Ubiquitin-likeprotein[Medicagotruncatula] 177 1.0353e-42
HX033920 whxl_6091_f21r 2012 3' Roots, two-week old seedlings treated with 150-mM NaCl for 24h (22℃ 16L-8D) 379bp Contig18377       PREDICTED:polyubiquitin11-like[Brachypodiumdistachyon] 133 1.74796e-29
HX085187 whxp_21047_a09f 2012 5' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23℃ ) 601bp Contig18377       Ubiquitin-likeprotein[Medicagotruncatula] 366 2.55026e-99
HX085219 whxp_21047_a09r 2012 3' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23℃ ) 537bp Contig18377       PREDICTED:polyubiquitin11-like[Brachypodiumdistachyon] 264 1.33527e-68
HX192940 whxu_19056_i15f 2012 5' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 755bp Contig18377       PREDICTED:polyubiquitin-like[Brachypodiumdistachyon] 481 9.40288e-134
HX192963 whxu_19056_i15r 2012 3' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 749bp Contig18377       PREDICTED:polyubiquitin11-like[Brachypodiumdistachyon] 396 5.10441e-108
whxv_3084_n23f 2012 5' Leaves, plant was grown at constant 23℃ 759bp Contig18377       PREDICTED:polyubiquitin-like[Brachypodiumdistachyon] 464 1.1999e-128
whxv_3084_n23r 2012 3' Leaves, plant was grown at constant 23℃ 803bp Contig18377       PREDICTED:polyubiquitin11-like[Brachypodiumdistachyon] 423 2.62014e-116
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