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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

List
*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 109
First Previous 1-100 101-109 Next Last All
Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
whdl_21077_k17f 2012 5' Crown of seedling 326bp Contig11545       chlorophylla-bbindingprotein[Triticumaestivum] 225 5.77209e-57
whkv_1040_i12f 2012 5' Shoot grown with continuous light after cold treatment 184bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 84 1.61566e-14
whkv_1040_i12r 2012 3' Shoot grown with continuous light after cold treatment 353bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 97 1.39034e-18
whkv_12072_j19f 2012 5' Shoot grown with continuous light after cold treatment 682bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 290 3.22067e-76
whkv_12072_j19r 2012 3' Shoot grown with continuous light after cold treatment 626bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 290 2.64432e-76
whkv_4051_n14f 2012 5' Shoot grown with continuous light after cold treatment 693bp Contig11545       RecName:Full=Chlorophylla-bbindingprotein1B-21,chloroplastic;AltName:Full=LHCItypeICAB-1B-21;AltName:Full=LHCI-730chlorophylla/bbindingprotein;AltName:Full=Light-harvestingcomplexI21kDaprotein;Flags:Precursor 398 8.67401e-109
whkv_4051_n14r 2012 3' Shoot grown with continuous light after cold treatment 660bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 281 1.38765e-73
whsh_15081_a06f 2012 5' - 544bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 218 6.53658e-55
whsh_15081_a06r 2012 3' - 555bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 237 1.44306e-60
whsh_5033_a21f 2012 5' - 352bp Contig11545       RemNprotein[BurkholderiaambifariaIOP40-10] 39 0.451073
whsh_5033_a21r 2012 3' - 338bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 52 3.86711e-05
whsh_1058_d10r 2012 3' - 170bp Contig11545            
whsh_6068_e11f 2012 5' - 307bp Contig11545       PREDICTED:uncharacterizedproteinLOC100891424[Strongylocentrotuspurpuratus] 36 4.90129
whsh_6067_e11r 2012 3' - 300bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 40 0.261801
whsh_15011_g01f 2012 5' - 380bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 93 3.41926e-17
whsh_15011_g01r 2012 3' - 336bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 97 1.36905e-18
whsh_15054_j04r 2012 3' - 97bp Contig11545            
whsh_18038_j09f 2012 5' - 305bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 60 1.86501e-07
whsh_18038_j09r 2012 3' - 295bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 88 1.10683e-15
whsh_15077_k05f 2012 5' - 171bp Contig11545            
whsh_15077_k05r 2012 3' - 157bp Contig11545            
whv3_6013_d01r 2012 3' Shoot grown under cold condition for 3days 62bp Contig11545       PREDICTED:chlorophylla-bbindingprotein1B-21,chloroplastic-like[Brachypodiumdistachyon] 44 0.00858519
whv3_11005_l02f 2012 5' Shoot grown under cold condition for 3days 330bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 40 0.262352
whv3_11005_l02r 2012 3' Shoot grown under cold condition for 3days 300bp Contig11545       PREDICTED:chlorophylla-bbindingprotein1B-21,chloroplastic-like[Brachypodiumdistachyon] 56 2.71281e-06
whv3_12004_m04f 2012 5' Shoot grown under cold condition for 3days 567bp Contig11545       chlorophylla-bbindingprotein[Triticumaestivum] 399 3.08805e-109
whv3_12004_m04r 2012 3' Shoot grown under cold condition for 3days 374bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 155 5.65468e-36
whvd_18084_m24f 2012 5' Shoot grown with dessication 473bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 166 3.16973e-39
whvd_18084_m24r 2012 3' Shoot grown with dessication 439bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 179 2.7301e-43
whvh_12026_h07f 2012 5' Shoot with heat shock treatment 442bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 143 2.91043e-32
whvh_12026_h07r 2012 3' Shoot with heat shock treatment 419bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 166 2.46358e-39
whxe_16015_a02f 2012 5' Seedling, infected with leaf rust 670bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 336 2.86861e-90
whxe_16015_a02r 2012 3' Seedling, infected with leaf rust 576bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 239 3.22778e-61
whxe_9046_c11f 2012 5' Seedling, infected with leaf rust 632bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 354 1.50404e-95
whxe_9046_c11r 2012 3' Seedling, infected with leaf rust 742bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 356 4.36201e-96
whxe_7021_l06f 2012 5' Seedling, infected with leaf rust 353bp Contig11545       RemNprotein[BurkholderiaambifariaIOP40-10] 36 2.91252
whxe_7021_l06r 2012 3' Seedling, infected with leaf rust 331bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 59 5.43716e-07
whxe_7069_l17f 2012 5' Seedling, infected with leaf rust 361bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 40 0.261391
whxe_7069_l17r 2012 3' Seedling, infected with leaf rust 331bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 59 5.43716e-07
whxe_7069_l18f 2012 5' Seedling, infected with leaf rust 334bp Contig11545       RemNprotein[BurkholderiaambifariaIOP40-10] 36 2.87882
whxe_7069_l18r 2012 3' Seedling, infected with leaf rust 308bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 59 5.40646e-07
whxf_3014_d03f 2012 5' Seedling, infected with leaf rust 294bp Contig11545       hypotheticalprotein[MonosigabrevicollisMX1] 36 2.92626
whxf_3014_d03r 2012 3' Seedling, infected with leaf rust 258bp Contig11545       hypotheticalproteinH04402_01417[ClostridiumbotulinumH04402065] 35 8.56683
whxf_31058_g15f 2012 5' Seedling, infected with leaf rust 62bp Contig11545       PREDICTED:chlorophylla-bbindingprotein1B-21,chloroplastic-like[Brachypodiumdistachyon] 48 0.000594543
whxf_7053_l13f 2012 5' Seedling, infected with leaf rust 596bp Contig11545       RecName:Full=Chlorophylla-bbindingprotein1B-21,chloroplastic;AltName:Full=LHCItypeICAB-1B-21;AltName:Full=LHCI-730chlorophylla/bbindingprotein;AltName:Full=Light-harvestingcomplexI21kDaprotein;Flags:Precursor 421 8.76633e-116
whxf_7053_l13r 2012 3' Seedling, infected with leaf rust 507bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 199 3.39767e-49
whxf_39083_n21f 2012 5' Seedling, infected with leaf rust 584bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 195 5.62161e-48
whxf_12082_o24f 2012 5' Seedling, infected with leaf rust 481bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 186 2.93346e-45
whxf_12082_o24r 2012 3' Seedling, infected with leaf rust 454bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 212 5.03604e-53
whxg_22032_a07f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 488bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 168 4.9292e-40
whxg_23032_a07f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 491bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 168 4.90678e-40
whxg_22032_a07r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 499bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 205 6.09368e-51
whxg_23032_a07r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 522bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 205 6.44081e-51
whxg_22032_a08f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 492bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 168 4.90678e-40
whxg_22032_a08r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 503bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 205 6.06545e-51
whxg_2084_n23r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 682bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 362 5.05011e-98
whxh_10070_k20f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 523bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 168 5.237e-40
whxh_11070_k20f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 382bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 73 2.79245e-11
whxh_12070_k20f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 56bp Contig11545            
whxh_10070_k20r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 522bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 205 6.44081e-51
whxh_11070_k20r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 315bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 188 4.49079e-46
whxh_31001_o02f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 371bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 108 1.03941e-21
whxh_32001_o02f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 380bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 113 1.87187e-23
whxh_33001_o02f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 331bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 80 2.27907e-13
whxh_34001_o02f 2012 5' Seedling, infected with powdery mildew (AvrPm3b) 53bp Contig11545            
whxh_31001_o02r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 337bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 117 1.27842e-24
whxh_32001_o02r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 345bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 117 1.31335e-24
whxh_33001_o02r 2012 3' Seedling, infected with powdery mildew (AvrPm3b) 334bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 117 1.28328e-24
HX000584 whxi_11096_a24f 2012 5' Two-week old seedlingsi22Ž 16L-8Dj 330bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 143 2.87385e-32
HX000598 whxi_11096_a24r 2012 3' Two-week old seedlingsi22Ž 16L-8Dj 316bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 125 8.22075e-27
HX001327 whxi_6029_c05f 2012 5' Two-week old seedlingsi22Ž 16L-8Dj 383bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 132 5.0655e-29
HX001337 whxi_6029_c05r 2012 3' Two-week old seedlingsi22Ž 16L-8Dj 375bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 160 2.28669e-37
HX005134 whxi_14023_i05f 2012 5' Two-week old seedlingsi22Ž 16L-8Dj 310bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 213 2.23183e-53
HX005148 whxi_14023_i05r 2012 3' Two-week old seedlingsi22Ž 16L-8Dj 298bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 89 3.77664e-16
HX026266 whxk_5072_j19r 2012 3' Shoots, two-week old seedlings treated with 150-mM NaCl for 6h (22Ž 16L-8D) 392bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 114 1.07989e-23
HX059858 whxn_28025_h05f 2012 5' Leaves, plant was grown at constant 23Ž 477bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 143 2.18055e-32
HX059889 whxn_28025_h05r 2012 3' Leaves, plant was grown at constant 23Ž 446bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 171 7.60847e-41
HX061505 whxn_13039_i10f 2012 5' Leaves, plant was grown at constant 23Ž 412bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 106 2.96601e-21
HX061537 whxn_13039_i10r 2012 3' Leaves, plant was grown at constant 23Ž 398bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 121 9.05707e-26
HX062065 whxn_33072_i19r 2012 3' Leaves, plant was grown at constant 23Ž 717bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 338 1.48764e-90
HX073035 whxo_19048_b11f 2012 5' Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 607bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 268 9.88826e-70
HX073054 whxo_19048_b11r 2012 3' Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 590bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 297 1.85046e-78
HX101952 whxp_9036_m11f 2012 5' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 584bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 226 3.88407e-57
HX101982 whxp_9036_m11r 2012 3' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 569bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 265 6.9267e-69
HX120528 whxq_15020_m07f 2012 5' Leaves, seedling were infercted with blast strain Pr58 for 4 days (27Ž ) 412bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 134 1.01284e-29
HX120548 whxq_15020_m07r 2012 3' Leaves, seedling were infercted with blast strain Pr58 for 4 days (27Ž ) 426bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 171 7.59441e-41
HX163872 whxt_19064_a16f 2012 5' Roots, 18 day old plants were grown hydroponically 763bp Contig11545       RecName:Full=Chlorophylla-bbindingprotein1B-21,chloroplastic;AltName:Full=LHCItypeICAB-1B-21;AltName:Full=LHCI-730chlorophylla/bbindingprotein;AltName:Full=Light-harvestingcomplexI21kDaprotein;Flags:Precursor 514 1.01987e-143
HX163899 whxt_19064_a16r 2012 3' Roots, 18 day old plants were grown hydroponically 644bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 308 7.63322e-82
whxv_6015_b02f 2012 5' Leaves, plant was grown at constant 23Ž 778bp Contig11545       chlorophylla-bbindingprotein[Triticumaestivum] 507 2.1892e-141
whxv_6015_b02r 2012 3' Leaves, plant was grown at constant 23Ž 743bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 366 5.55568e-99
whxv_7030_c08f 2012 5' Leaves, plant was grown at constant 23Ž 780bp Contig11545       RecName:Full=Chlorophylla-bbindingprotein1B-21,chloroplastic;AltName:Full=LHCItypeICAB-1B-21;AltName:Full=LHCI-730chlorophylla/bbindingprotein;AltName:Full=Light-harvestingcomplexI21kDaprotein;Flags:Precursor 509 3.43374e-142
whxv_7030_c08r 2012 3' Leaves, plant was grown at constant 23Ž 731bp Contig11545       RecName:Full=Chlorophylla-bbindingprotein1B-21,chloroplastic;AltName:Full=LHCItypeICAB-1B-21;AltName:Full=LHCI-730chlorophylla/bbindingprotein;AltName:Full=Light-harvestingcomplexI21kDaprotein;Flags:Precursor 392 6.97589e-107
whxv_9030_d07f 2012 5' Leaves, plant was grown at constant 23Ž 766bp Contig11545       RecName:Full=Chlorophylla-bbindingprotein1B-21,chloroplastic;AltName:Full=LHCItypeICAB-1B-21;AltName:Full=LHCI-730chlorophylla/bbindingprotein;AltName:Full=Light-harvestingcomplexI21kDaprotein;Flags:Precursor 514 1.02366e-143
whxv_9030_d07r 2012 3' Leaves, plant was grown at constant 23Ž 722bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 366 5.20213e-99
whxv_1088_j24r 2012 3' Leaves, plant was grown at constant 23Ž 384bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 118 9.88592e-25
whxw_7020_n07f 2012 5' Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 768bp Contig11545       RecName:Full=Chlorophylla-bbindingprotein1B-21,chloroplastic;AltName:Full=LHCItypeICAB-1B-21;AltName:Full=LHCI-730chlorophylla/bbindingprotein;AltName:Full=Light-harvestingcomplexI21kDaprotein;Flags:Precursor 514 1.02366e-143
whxw_7020_n07r 2012 3' Leaves, seedling were infercted with blast strain Pr48 for 4 days (23Ž ) 704bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 370 3.44436e-100
whxx_1028_e08f 2012 5' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 151bp Contig11545       chlorophylla-bbindingprotein[Triticumaestivum] 102 4.38317e-20
whxx_3025_h05f 2012 5' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 613bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 230 1.80095e-58
whxx_3025_h05r 2012 3' Leaves, seedling were infercted with blast strain Pr58 for 4 days (23Ž ) 602bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 260 1.53225e-67
whxy_7080_b20f 2012 5' Leaves, seedling were infercted with blast strain Pr58 for 4 days (27Ž ) 424bp Contig11545       light-harvestingcomplexI,partial(chloroplast)[Hordeumvulgare] 150 1.81941e-34
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