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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

List
*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 127
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Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
whcs_19095_a22f 2012 5' Callus 713bp Contig1973       elongationfactor1alpha[Steviarebaudiana] 427 2.411e-117
whcs_14096_a23f 2012 5' Callus 658bp Contig1973       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 445 4.20339e-123
whcs_4092_f23f 2012 5' Callus 663bp Contig1973       elongationfactor1alpha[Steviarebaudiana] 409 4.46498e-112
whcs_17025_g05f 2012 5' Callus 711bp Contig1973       elongationfactor1alpha[Steviarebaudiana] 439 4.71726e-121
whcs_15042_g11f 2012 5' Callus 656bp Contig1973       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 443 1.59729e-122
whcs_14090_h24f 2012 5' Callus 637bp Contig1973       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 431 7.51156e-119
whcs_19069_k17f 2012 5' Callus 693bp Contig1973       elongationfactor1alpha[Steviarebaudiana] 461 1.10125e-127
whcs_12052_n15f 2012 5' Callus 664bp Contig1973       elongationfactor1alpha[Steviarebaudiana] 449 3.93922e-124
whdl_7075_g05f 2012 5' Crown of seedling 166bp Contig1973       unknown[Medicagotruncatula] 109 3.52978e-22
whdl_15007_m07f 2012 5' Crown of seedling 442bp Contig1973       elongationfactor1alpha[Hordeumbrevisubulatum] 291 8.64196e-77
whdp_15095_a22f 2012 5' Seed DPA20 586bp Contig1973       translationelongationfactor1alpha[Actaearacemosa] 380 2.10181e-103
whdp_13013_c02f 2012 5' Seed DPA20 529bp Contig1973       elongationfactor1alpha[Steviarebaudiana] 339 3.06195e-91
whdp_18041_h10f 2012 5' Seed DPA20 561bp Contig1973       elongationfactor1alpha[Steviarebaudiana] 341 7.36859e-92
whdp_18057_h14f 2012 5' Seed DPA20 579bp Contig1973       elongationfactor1alpha[Hordeumbrevisubulatum] 388 7.59146e-106
whe_1033_a09f 2012 5' Seed DPA10 564bp Contig1973       elongationfactor1alpha[Hordeumbrevisubulatum] 373 2.32761e-101
whe_11073_c11f 2012 5' Seed DPA10 541bp Contig1973       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 360 1.39755e-97
whe_3032_p08f 2012 5' Seed DPA10 593bp Contig1973       elongationfactor1alpha[Steviarebaudiana] 344 7.86134e-93
whei_11053_k13f 2012 5' Dormant seed with water absorption after breaking 549bp Contig1973       elongationfactor1-alpha[Deschampsiaantarctica] 332 4.13923e-89
whei_18069_k17f 2012 5' Dormant seed with water absorption after breaking 460bp Contig1973       elongationfactor1-alpha[Deschampsiaantarctica] 291 6.47483e-77
whei_15086_l23f 2012 5' Dormant seed with water absorption after breaking 215bp Contig1973       elongationfactor1alpha[Arummaculatum] 143 1.66275e-32
whei_19001_p01f 2012 5' Dormant seed with water absorption after breaking 534bp Contig1973       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 364 6.95674e-99
whei_16017_p06f 2012 5' Dormant seed with water absorption after breaking 545bp Contig1973       elongationfactor1-alpha[Deschampsiaantarctica] 329 2.62931e-88
whem_19040_j12f 2012 5' Dormant seed with water absorption 571bp Contig1973       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 383 1.77635e-104
whem_13071_j18f 2012 5' Dormant seed with water absorption 435bp Contig1973       elongationfactor1alpha[Hordeumbrevisubulatum] 293 1.70879e-77
whf_2068_f11f 2012 5' Spike at flowering date 510bp Contig1973       elongationfactor1-alpha[Deschampsiaantarctica] 332 3.3585e-89
whh_22041_c21f 2012 5' Spike at heading date 478bp Contig1973       elongationfactor1-alpha[Deschampsiaantarctica] 258 4.65087e-67
whh_1014_l19f 2012 5' Spike at heading date 455bp Contig1973       elongationfactor1-alpha[Deschampsiaantarctica] 260 1.60553e-67
whh_14087_m12f 2012 5' Spike at heading date 201bp Contig1973       elongationfactor1alpha[Hordeumbrevisubulatum] 141 8.3622e-32
whh_14007_m13f 2012 5' Spike at heading date 590bp Contig1973       elongationfactor1-alpha[Deschampsiaantarctica] 326 2.84823e-87
whh_10087_m24f 2012 5' Spike at heading date 338bp Contig1973       elongationfactor1alpha[Hordeumbrevisubulatum] 229 3.01475e-58
whh_5063_o16f 2012 5' Spike at heading date 552bp Contig1973       elongationfactor1-alpha[Deschampsiaantarctica] 331 9.40567e-89
whkp_5075_e18f 2012 5' Shoot grown under continuous light 694bp Contig1973       elongationfactor1alpha[Steviarebaudiana] 446 2.77742e-123
whkp_15057_g13f 2012 5' Shoot grown under continuous light 572bp Contig1973       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 387 1.23016e-105
whkp_6020_m08f 2012 5' Shoot grown under continuous light 691bp Contig1973       elongationfactor1alpha[Steviarebaudiana] 427 2.25312e-117
whkv_19063_a13f 2012 5' Shoot grown with continuous light after cold treatment 692bp Contig1973       elongationfactor1alpha[Steviarebaudiana] 427 1.7437e-117
whms_20079_b17f 2012 5' Seed DPA5 of DT3DL CS wheat 613bp Contig1973       elongationfactor1alpha[Steviarebaudiana] 390 1.75069e-106
whoh_1058_c10f 2012 5' Pistil at heading date 465bp Contig1973       elongationfactor1alpha[Hordeumbrevisubulatum] 313 1.61977e-83
whoh_10027_d08f 2012 5' Pistil at heading date 52bp Contig1973       PREDICTED:elongationfactor1-alpha2isoform2[Callithrixjacchus] 40 0.137623
whok_8032_a07f 2012 5' Seed DPA5 682bp Contig1973       elongationfactor1alpha[Hordeumbrevisubulatum] 460 1.37772e-127
whok_10066_o20f 2012 5' Seed DPA5 626bp Contig1973       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 417 1.09817e-114
whok_19001_p01f 2012 5' Seed DPA5 656bp Contig1973       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 442 3.55838e-122
whpc_8096_b23f 2012 5' Anther at meiosis 718bp Contig1973       elongationfactor1alpha[Steviarebaudiana] 429 4.90658e-118
whpc_8038_k11f 2012 5' Anther at meiosis 691bp Contig1973       elongationfactor1alpha[Steviarebaudiana] 429 3.51345e-118
whpc_8021_l06f 2012 5' Anther at meiosis 66bp Contig1973       PREDICTED:LOWQUALITYPROTEIN:elongationfactor1-alpha-like[Brachypodiumdistachyon] 50 0.000164282
whr_15034_b09f 2012 5' Root 381bp Contig1973       elongationfactor1-alpha[Deschampsiaantarctica] 251 7.51206e-65
whr_3009_c01f 2012 5' Root 284bp Contig1973       elongationfactor1-alpha[Deschampsiaantarctica] 190 1.18181e-46
whr_18073_p22f 2012 5' Root 589bp Contig1973       elongationfactor1alpha[Steviarebaudiana] 346 2.65969e-93
whrd_17029_d06f 2012 5' Root of dessiccated seed 576bp Contig1973       elongationfactor1alpha[Hordeumbrevisubulatum] 390 1.15168e-106
whrd_10045_d09f 2012 5' Root of dessiccated seed 593bp Contig1973       elongationfactor1alpha[Steviarebaudiana] 359 4.02811e-97
whrd_10045_d10f 2012 5' Root of dessiccated seed 334bp Contig1973       elongationfactor1alpha[Hordeumbrevisubulatum] 222 4.83144e-56
whrd_15026_h07f 2012 5' Root of dessiccated seed 598bp Contig1973       elongationfactor1alpha[Steviarebaudiana] 358 5.31761e-97
whrd_5067_n18f 2012 5' Root of dessiccated seed 560bp Contig1973       elongationfactor1alpha[Steviarebaudiana] 341 7.36859e-92
whsc_11062_c16f 2012 5' Shoot grown with cold treatment 503bp Contig1973       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 339 1.57777e-91
whsc_20061_d13f 2012 5' Shoot grown with cold treatment 571bp Contig1973       elongationfactor1alpha[Steviarebaudiana] 346 2.40638e-93
whsc_17059_f13f 2012 5' Shoot grown with cold treatment 614bp Contig1973       elongationfactor1alpha[Steviarebaudiana] 359 4.38475e-97
whsc_20060_f16f 2012 5' Shoot grown with cold treatment 544bp Contig1973       elongationfactor1-alpha[Deschampsiaantarctica] 333 1.39418e-89
whsc_17092_f23f 2012 5' Shoot grown with cold treatment 609bp Contig1973       elongationfactor1alpha[Steviarebaudiana] 359 4.25947e-97
whsc_16025_h05f 2012 5' Shoot grown with cold treatment 567bp Contig1973       elongationfactor1alpha[Hordeumbrevisubulatum] 380 1.47739e-103
whsc_6057_h13f 2012 5' Shoot grown with cold treatment 592bp Contig1973       translationelongationfactor1alpha[Actaearacemosa] 354 7.59669e-96
whsc_3067_m18f 2012 5' Shoot grown with cold treatment 658bp Contig1973       elongationfactor1alpha[Hordeumbrevisubulatum] 440 1.76601e-121
whsc_5002_p03f 2012 5' Shoot grown with cold treatment 643bp Contig1973       elongationfactor1alpha[Hordeumbrevisubulatum] 432 4.57752e-119
whsd_10030_c07f 2012 5' Shoot grown with dessication 574bp Contig1973       elongationfactor1alpha[Hordeumbrevisubulatum] 381 8.9706e-104
whsd_17073_g17f 2012 5' Shoot grown with dessication 592bp Contig1973       translationelongationfactor1alpha[Actaearacemosa] 354 7.59669e-96
whsd_5034_o12f 2012 5' Shoot grown with dessication 602bp Contig1973       translationelongationfactor1alpha[Actaearacemosa] 354 7.79675e-96
whsl_31033_a03f 2012 5' Seed DPA30 52bp Contig1973       unknown[Medicagotruncatula] 40 0.179741
whsl_20050_a10f 2012 5' Seed DPA30 539bp Contig1973       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 349 1.8503e-94
whsl_5010_c19f 2012 5' Seed DPA30 135bp Contig1973       unknown[Medicagotruncatula] 94 8.88325e-18
whsl_28028_h02f 2012 5' Seed DPA30 580bp Contig1973       elongationfactor1alpha[Steviarebaudiana] 344 7.24717e-93
whsl_20031_l20f 2012 5' Seed DPA30 546bp Contig1973       elongationfactor1alpha[Hordeumbrevisubulatum] 364 5.64719e-99
whsl_18088_n12f 2012 5' Seed DPA30 437bp Contig1973       elongationfactor1alpha[Hordeumbrevisubulatum] 294 7.63773e-78
whsp_13076_f19f 2012 5' 123bp Contig1973       PREDICTED:LOWQUALITYPROTEIN:elongationfactor1-alpha-like[Brachypodiumdistachyon] 89 2.90176e-16
whsp_7088_i23f 2012 5' 463bp Contig1973       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 318 5.05751e-85
whsp_7088_i24f 2012 5' 392bp Contig1973       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 266 2.2206e-69
whsp_18005_l02r 2012 3' 360bp Contig1973       elongationfactor1-alpha[Deschampsiaantarctica] 190 1.19743e-46
whv_161084_m23f 2012 5' Shoot grown under cold condition for 16days 690bp Contig1973       elongationfactor1alpha[Steviarebaudiana] 429 3.47607e-118
whv_1620004_n03f 2012 5' Shoot grown under cold condition for 16days 702bp Contig1973       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 470 1.85342e-130
whv_168051_n14f 2012 5' Shoot grown under cold condition for 16days 551bp Contig1973       elongationfactor1alpha[Hordeumbrevisubulatum] 335 4.98732e-90
whva_14037_l10f 2012 5' Shoot with ABA treatment 687bp Contig1973       elongationfactor1alpha[Steviarebaudiana] 422 7.17011e-116
whvd_6081_o21f 2012 5' Shoot grown with dessication 720bp Contig1973       elongationfactor1alpha[Hordeumbrevisubulatum] 480 1.43506e-133
whvs_13013_c02f 2012 5' Liquid cultured tissue 649bp Contig1973       elongationfactor1alpha[Hordeumbrevisubulatum] 434 1.21986e-119
whvs_3023_j06f 2012 5' Liquid cultured tissue 716bp Contig1973       elongationfactor1alpha[Steviarebaudiana] 424 1.20853e-116
whvs_2085_k21f 2012 5' Liquid cultured tissue 652bp Contig1973       elongationfactor1alpha[Hordeumbrevisubulatum] 430 2.32931e-118
whvs_19036_m11f 2012 5' Liquid cultured tissue 713bp Contig1973       elongationfactor1alpha[Steviarebaudiana] 427 2.411e-117
whxa_18048_a11f 2012 5' Root 645bp Contig1973       elongationfactor1alpha[Hordeumbrevisubulatum] 429 2.96706e-118
whxa_11047_b10f 2012 5' Root 285bp Contig1973       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 195 3.67377e-48
whxa_18017_p05f 2012 5' Root 593bp Contig1973       elongationfactor1alpha[Steviarebaudiana] 356 1.99913e-96
whxb_2063_a13f 2012 5' Root 531bp Contig1973       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 361 7.52437e-98
whxb_18013_c02f 2012 5' Root 515bp Contig1973       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 349 2.07389e-94
whxb_10007_j01f 2012 5' Root 589bp Contig1973       elongationfactor1alpha[Hordeumbrevisubulatum] 396 2.92702e-108
whxb_33056_j16f 2012 5' Root 589bp Contig1973       elongationfactor1alpha[Hordeumbrevisubulatum] 396 2.92702e-108
whxb_4018_p08f 2012 5' Root 631bp Contig1973       elongationfactor1alpha[Arummaculatum] 425 5.33787e-117
whxc_31087_i22f 2012 5' Root, treated at 50 microM Al for 6h 375bp Contig1973       elongationfactor1-alpha[Deschampsiaantarctica] 219 2.43181e-55
whxc_31088_i23f 2012 5' Root, treated at 50 microM Al for 6h 312bp Contig1973       elongationfactor1alpha[Hordeumbrevisubulatum] 208 7.17957e-52
whxc_28054_k16f 2012 5' Root, treated at 50 microM Al for 6h 426bp Contig1973       elongationfactor1-alpha[Deschampsiaantarctica] 247 1.42231e-63
whxd_16093_d22f 2012 5' Root, treated at 50 microM Al for 6h 497bp Contig1973       elongationfactor1-alpha[Deschampsiaantarctica] 292 3.80793e-77
whxe_34044_f11f 2012 5' Seedling, infected with leaf rust 545bp Contig1973       elongationfactor1-alpha[Deschampsiaantarctica] 329 3.43399e-88
whxe_32010_h04f 2012 5' Seedling, infected with leaf rust 623bp Contig1973       elongationfactor1alpha[Hordeumbrevisubulatum] 415 7.02197e-114
whxe_33010_h04f 2012 5' Seedling, infected with leaf rust 548bp Contig1973       elongationfactor1alpha[Hordeumbrevisubulatum] 366 1.98052e-99
whxf_35023_j06f 2012 5' Seedling, infected with leaf rust 628bp Contig1973       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 427 1.07555e-117
whxf_36023_j06f 2012 5' Seedling, infected with leaf rust 473bp Contig1973       RecName:Full=Elongationfactor1-alpha;Short=EF-1-alpha 313 1.60543e-83
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