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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

List
*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 160
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Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
whv3_4032_a08f 2012 5' Shoot grown under cold condition for 3days 350bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 83 3.55753e-14
whv3_4032_a08r 2012 3' Shoot grown under cold condition for 3days 324bp Contig11974       RecName:Full=Ribulosebisphosphatecarboxylasesmallchainclone512;Short=RuBisCOsmallsubunit 99 3.65758e-19
whv3_13063_a14f 2012 5' Shoot grown under cold condition for 3days 580bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 1.96902e-98
whv3_13063_a14r 2012 3' Shoot grown under cold condition for 3days 585bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 341 8.2843e-92
whv3_15064_a15f 2012 5' Shoot grown under cold condition for 3days 741bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.56835e-98
whv3_15064_a15r 2012 3' Shoot grown under cold condition for 3days 697bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 343 4.37089e-92
whv3_9079_a18f 2012 5' Shoot grown under cold condition for 3days 717bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.33919e-98
whv3_9079_a18r 2012 3' Shoot grown under cold condition for 3days 670bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 343 4.02217e-92
whv3_14095_a21f 2012 5' Shoot grown under cold condition for 3days 766bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.81164e-98
whv3_14095_a21r 2012 3' Shoot grown under cold condition for 3days 683bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 334 1.14019e-89
whv3_17096_a23f 2012 5' Shoot grown under cold condition for 3days 650bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 2.67747e-98
whv3_18096_a23r 2012 3' Shoot grown under cold condition for 3days 687bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.05934e-98
whv3_11031_b06f 2012 5' Shoot grown under cold condition for 3days 372bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 93 2.02853e-17
whv3_11031_b06r 2012 3' Shoot grown under cold condition for 3days 331bp Contig11974       RecName:Full=Ribulosebisphosphatecarboxylasesmallchainclone512;Short=RuBisCOsmallsubunit 103 3.28335e-20
whv3_16032_b08f 2012 5' Shoot grown under cold condition for 3days 737bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.53561e-98
whv3_16032_b08r 2012 3' Shoot grown under cold condition for 3days 725bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.40466e-98
whv3_20047_b10f 2012 5' Shoot grown under cold condition for 3days 717bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.33919e-98
whv3_20047_b10r 2012 3' Shoot grown under cold condition for 3days 708bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 329 6.80644e-88
whv3_10063_b14f 2012 5' Shoot grown under cold condition for 3days 674bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 2.89486e-98
whv3_10063_b14r 2012 3' Shoot grown under cold condition for 3days 700bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 344 1.53388e-92
whv3_20030_c07f 2012 5' Shoot grown under cold condition for 3days 770bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.84422e-98
whv3_20030_c07r 2012 3' Shoot grown under cold condition for 3days 680bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 349 4.42411e-94
whv3_2046_c12f 2012 5' Shoot grown under cold condition for 3days 728bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.4374e-98
whv3_2046_c12r 2012 3' Shoot grown under cold condition for 3days 696bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 341 1.67842e-91
whv3_8062_c15f 2012 5' Shoot grown under cold condition for 3days 205bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 49 0.000431045
whv3_5078_c20f 2012 5' Shoot grown under cold condition for 3days 698bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.15803e-98
whv3_5078_c20r 2012 3' Shoot grown under cold condition for 3days 694bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 329 6.53143e-88
whv3_11013_d02f 2012 5' Shoot grown under cold condition for 3days 656bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 2.74358e-98
whv3_17013_d02f 2012 5' Shoot grown under cold condition for 3days 655bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 2.74358e-98
whv3_11013_d02r 2012 3' Shoot grown under cold condition for 3days 669bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 344 1.37575e-92
whv3_17013_d02r 2012 3' Shoot grown under cold condition for 3days 690bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 329 6.46268e-88
whv3_18013_d02r 2012 3' Shoot grown under cold condition for 3days 701bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 329 6.66894e-88
whv3_8014_d04f 2012 5' Shoot grown under cold condition for 3days 647bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 2.64441e-98
whv3_8014_d04r 2012 3' Shoot grown under cold condition for 3days 629bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 288 7.79778e-76
whv3_17030_d08f 2012 5' Shoot grown under cold condition for 3days 650bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 2.67747e-98
whv3_18030_d08r 2012 3' Shoot grown under cold condition for 3days 706bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 343 4.55493e-92
whv3_9061_d14f 2012 5' Shoot grown under cold condition for 3days 697bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.15803e-98
whv3_9061_d14r 2012 3' Shoot grown under cold condition for 3days 699bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 339 6.37799e-91
whv3_4094_d24f 2012 5' Shoot grown under cold condition for 3days 737bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.53561e-98
whv3_4094_d24r 2012 3' Shoot grown under cold condition for 3days 622bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 349 3.62314e-94
whv3_3028_e08f 2012 5' Shoot grown under cold condition for 3days 656bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 2.74358e-98
whv3_3028_e08r 2012 3' Shoot grown under cold condition for 3days 699bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 337 2.42363e-90
whv3_3060_e15f 2012 5' Shoot grown under cold condition for 3days 680bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 2.96065e-98
whv3_4060_e15f 2012 5' Shoot grown under cold condition for 3days 696bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.15803e-98
whv3_4060_e15r 2012 3' Shoot grown under cold condition for 3days 691bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 343 4.32488e-92
whv3_9060_e16f 2012 5' Shoot grown under cold condition for 3days 728bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.4374e-98
whv3_9060_e16r 2012 3' Shoot grown under cold condition for 3days 686bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 334 1.15272e-89
whv3_11075_e18f 2012 5' Shoot grown under cold condition for 3days 723bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.37192e-98
whv3_5076_e19f 2012 5' Shoot grown under cold condition for 3days 700bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 334 1.21537e-89
whv3_3027_f06f 2012 5' Shoot grown under cold condition for 3days 438bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 306 1.93396e-81
whv3_3027_f06r 2012 3' Shoot grown under cold condition for 3days 693bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 343 4.37089e-92
whv3_2028_f08f 2012 5' Shoot grown under cold condition for 3days 607bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 2.25857e-98
whv3_7059_f14f 2012 5' Shoot grown under cold condition for 3days 752bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.6993e-98
whv3_8059_f14f 2012 5' Shoot grown under cold condition for 3days 449bp Contig11974       RecName:Full=Ribulosebisphosphatecarboxylasesmallchainclone512;Short=RuBisCOsmallsubunit 148 6.8678e-34
whv3_7059_f14r 2012 3' Shoot grown under cold condition for 3days 628bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 318 9.1899e-85
whv3_8059_f14r 2012 3' Shoot grown under cold condition for 3days 422bp Contig11974       RecName:Full=Ribulosebisphosphatecarboxylasesmallchainclone512;Short=RuBisCOsmallsubunit 168 6.45608e-40
whv3_8060_f15f 2012 5' Shoot grown under cold condition for 3days 693bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.09224e-98
whv3_8060_f15r 2012 3' Shoot grown under cold condition for 3days 692bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 343 4.32488e-92
whv3_6075_f18f 2012 5' Shoot grown under cold condition for 3days 718bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 341 1.35884e-91
whv3_6075_f18r 2012 3' Shoot grown under cold condition for 3days 658bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 337 2.13093e-90
whv3_3076_f19f 2012 5' Shoot grown under cold condition for 3days 708bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.25672e-98
whv3_3076_f19r 2012 3' Shoot grown under cold condition for 3days 675bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 2.89486e-98
whv3_8092_f24f 2012 5' Shoot grown under cold condition for 3days 663bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 2.80969e-98
whv3_8092_f24r 2012 3' Shoot grown under cold condition for 3days 653bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 343 3.79101e-92
whv3_1025_g05f 2012 5' Shoot grown under cold condition for 3days 144bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 81 1.31923e-13
whv3_19025_g05f 2012 5' Shoot grown under cold condition for 3days 616bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 361 8.96119e-98
whv3_19025_g05r 2012 3' Shoot grown under cold condition for 3days 593bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 2.13589e-98
whv3_16026_g08f 2012 5' Shoot grown under cold condition for 3days 688bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 330 2.17393e-88
whv3_16026_g08r 2012 3' Shoot grown under cold condition for 3days 680bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 334 1.12766e-89
whv3_9057_g14f 2012 5' Shoot grown under cold condition for 3days 84bp Contig11974            
whv3_15073_g18r 2012 3' Shoot grown under cold condition for 3days 223bp Contig11974       PREDICTED:hypotheticalproteinLOC100565328[Anoliscarolinensis] 35 8.56896
whv3_5089_g22f 2012 5' Shoot grown under cold condition for 3days 695bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.12513e-98
whv3_5089_g22r 2012 3' Shoot grown under cold condition for 3days 666bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 343 4.02217e-92
whv3_10009_h01f 2012 5' Shoot grown under cold condition for 3days 692bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.09224e-98
whv3_10009_h01r 2012 3' Shoot grown under cold condition for 3days 629bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 315 5.95672e-84
whv3_17009_h02r 2012 3' Shoot grown under cold condition for 3days 54bp Contig11974            
whv3_20010_h03r 2012 3' Shoot grown under cold condition for 3days 672bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 343 4.04883e-92
whv3_18010_h04f 2012 5' Shoot grown under cold condition for 3days 717bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.33919e-98
whv3_17010_h04r 2012 3' Shoot grown under cold condition for 3days 704bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 357 1.76897e-96
whv3_3025_h06f 2012 5' Shoot grown under cold condition for 3days 654bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 2.71053e-98
whv3_3025_h06r 2012 3' Shoot grown under cold condition for 3days 700bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 359 4.60769e-97
whv3_11073_h17f 2012 5' Shoot grown under cold condition for 3days 695bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.12513e-98
whv3_11073_h17r 2012 3' Shoot grown under cold condition for 3days 657bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 318 1.01215e-84
whv3_13074_h20f 2012 5' Shoot grown under cold condition for 3days 690bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.09224e-98
whv3_13074_h20r 2012 3' Shoot grown under cold condition for 3days 609bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 314 1.57138e-83
whv3_14090_h24r 2012 3' Shoot grown under cold condition for 3days 83bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 60 1.87887e-07
whv3_9056_i15f 2012 5' Shoot grown under cold condition for 3days 512bp Contig11974       RecName:Full=Ribulosebisphosphatecarboxylasesmallchainclone512;Short=RuBisCOsmallsubunit 167 1.09041e-39
whv3_9056_i16f 2012 5' Shoot grown under cold condition for 3days 500bp Contig11974       RecName:Full=Ribulosebisphosphatecarboxylasesmallchainclone512;Short=RuBisCOsmallsubunit 167 1.07813e-39
whv3_19056_i16r 2012 3' Shoot grown under cold condition for 3days 687bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 337 2.32265e-90
whv3_2071_i18f 2012 5' Shoot grown under cold condition for 3days 696bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.15803e-98
whv3_2071_i18r 2012 3' Shoot grown under cold condition for 3days 665bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 318 1.04873e-84
whv3_19008_j03r 2012 3' Shoot grown under cold condition for 3days 514bp Contig11974       RecName:Full=Ribulosebisphosphatecarboxylasesmallchainclone512;Short=RuBisCOsmallsubunit 235 3.26037e-60
whv3_16024_j07f 2012 5' Shoot grown under cold condition for 3days 687bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.05934e-98
whv3_16024_j07r 2012 3' Shoot grown under cold condition for 3days 631bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 329 5.18132e-88
whv3_11024_j08f 2012 5' Shoot grown under cold condition for 3days 703bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.22382e-98
whv3_11024_j08r 2012 3' Shoot grown under cold condition for 3days 710bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 349 4.91568e-94
whv3_2040_j12f 2012 5' Shoot grown under cold condition for 3days 686bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.02645e-98
whv3_2040_j12r 2012 3' Shoot grown under cold condition for 3days 651bp Contig11974       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 315 6.40245e-84
whv3_3055_j13f 2012 5' Shoot grown under cold condition for 3days 261bp Contig11974       PREDICTED:hypotheticalproteinLOC100565328[Anoliscarolinensis] 35 8.53707
whv3_3055_j13r 2012 3' Shoot grown under cold condition for 3days 230bp Contig11974       predictedprotein[Hordeumvulgaresubsp.vulgare] 47 0.00126892
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