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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

List
*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 140
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Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
whv3_20031_a06f 2012 5' Shoot grown under cold condition for 3days 764bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.77906e-98
whv3_20031_a06r 2012 3' Shoot grown under cold condition for 3days 727bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 361 1.30621e-97
whv3_2032_a08f 2012 5' Shoot grown under cold condition for 3days 639bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 2.54525e-98
whv3_2032_a08r 2012 3' Shoot grown under cold condition for 3days 666bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 314 1.97782e-83
whv3_4047_a10f 2012 5' Shoot grown under cold condition for 3days 753bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.73203e-98
whv3_4047_a10r 2012 3' Shoot grown under cold condition for 3days 674bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 343 4.04883e-92
whv3_9063_a14f 2012 5' Shoot grown under cold condition for 3days 508bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 291 8.58034e-77
whv3_9064_a16f 2012 5' Shoot grown under cold condition for 3days 641bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 359 4.86247e-97
whv3_20015_b02f 2012 5' Shoot grown under cold condition for 3days 691bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.09224e-98
whv3_20015_b02r 2012 3' Shoot grown under cold condition for 3days 649bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 361 1.01744e-97
whv3_5048_b11f 2012 5' Shoot grown under cold condition for 3days 693bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.12513e-98
whv3_5048_b11r 2012 3' Shoot grown under cold condition for 3days 701bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 337 2.44888e-90
whv3_4079_b17f 2012 5' Shoot grown under cold condition for 3days 709bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.25672e-98
whv3_4079_b17r 2012 3' Shoot grown under cold condition for 3days 688bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 337 2.3479e-90
whv3_10080_b20f 2012 5' Shoot grown under cold condition for 3days 759bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.76477e-98
whv3_10080_b20r 2012 3' Shoot grown under cold condition for 3days 676bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 344 1.40738e-92
whv3_13096_b24f 2012 5' Shoot grown under cold condition for 3days 594bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 2.13589e-98
whv3_3096_b24f 2012 5' Shoot grown under cold condition for 3days 732bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.47014e-98
whv3_13096_b24r 2012 3' Shoot grown under cold condition for 3days 563bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 361 5.36602e-98
whv3_3096_b24r 2012 3' Shoot grown under cold condition for 3days 661bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 334 1.07016e-89
whv3_7029_c06f 2012 5' Shoot grown under cold condition for 3days 542bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 291 1.04126e-76
whv3_7029_c06r 2012 3' Shoot grown under cold condition for 3days 542bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 315 3.94762e-84
whv3_3062_c16f 2012 5' Shoot grown under cold condition for 3days 746bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.63382e-98
whv3_3062_c16r 2012 3' Shoot grown under cold condition for 3days 715bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.27371e-98
whv3_15077_c18f 2012 5' Shoot grown under cold condition for 3days 276bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 182 5.52909e-44
whv3_17078_c19f 2012 5' Shoot grown under cold condition for 3days 617bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 2.35821e-98
whv3_18078_c19r 2012 3' Shoot grown under cold condition for 3days 666bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 343 4.02217e-92
whv3_20078_c20f 2012 5' Shoot grown under cold condition for 3days 695bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.12513e-98
whv3_20078_c20r 2012 3' Shoot grown under cold condition for 3days 721bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.33919e-98
whv3_10094_c23f 2012 5' Shoot grown under cold condition for 3days 694bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.12513e-98
whv3_10094_c23r 2012 3' Shoot grown under cold condition for 3days 667bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 336 3.72136e-90
whv3_16046_d11f 2012 5' Shoot grown under cold condition for 3days 727bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.4374e-98
whv3_16046_d11r 2012 3' Shoot grown under cold condition for 3days 654bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 359 3.91399e-97
whv3_2046_d12f 2012 5' Shoot grown under cold condition for 3days 774bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.87679e-98
whv3_2046_d12r 2012 3' Shoot grown under cold condition for 3days 680bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 314 1.57717e-83
whv3_11077_d17f 2012 5' Shoot grown under cold condition for 3days 616bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 269 3.54848e-70
whv3_11077_d17r 2012 3' Shoot grown under cold condition for 3days 594bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 282 6.25787e-74
whv3_7094_d24f 2012 5' Shoot grown under cold condition for 3days 724bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.40466e-98
whv3_7094_d24r 2012 3' Shoot grown under cold condition for 3days 688bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 361 1.15005e-97
whv3_19012_e03f 2012 5' Shoot grown under cold condition for 3days 757bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.76477e-98
whv3_19012_e03r 2012 3' Shoot grown under cold condition for 3days 673bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 343 4.04883e-92
whv3_3060_e16f 2012 5' Shoot grown under cold condition for 3days 705bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.22382e-98
whv3_3060_e16r 2012 3' Shoot grown under cold condition for 3days 681bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 318 1.09223e-84
whv3_2076_e19f 2012 5' Shoot grown under cold condition for 3days 719bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.33919e-98
whv3_18076_e19r 2012 3' Shoot grown under cold condition for 3days 608bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 304 9.53323e-81
whv3_2076_e19r 2012 3' Shoot grown under cold condition for 3days 657bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 315 6.56054e-84
whv3_19043_f10f 2012 5' Shoot grown under cold condition for 3days 683bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 2.99355e-98
whv3_19043_f10r 2012 3' Shoot grown under cold condition for 3days 649bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 2.67747e-98
whv3_12044_f12r 2012 3' Shoot grown under cold condition for 3days 106bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 74 1.67778e-11
whv3_15059_f14f 2012 5' Shoot grown under cold condition for 3days 203bp Contig6435       hypotheticalproteinCLOSTMETH_03580[ClostridiummethylpentosumDSM5476] 36 4.94807
whv3_15059_f14r 2012 3' Shoot grown under cold condition for 3days 168bp Contig6435       hypotheticalproteinSCHCODRAFT_258494[SchizophyllumcommuneH4-8] 35 8.43334
whv3_11060_f16f 2012 5' Shoot grown under cold condition for 3days 625bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 275 8.80285e-72
whv3_11060_f16r 2012 3' Shoot grown under cold condition for 3days 587bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 282 6.06231e-74
whv3_9009_g02f 2012 5' Shoot grown under cold condition for 3days 641bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 2.5783e-98
whv3_9009_g02r 2012 3' Shoot grown under cold condition for 3days 650bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 329 5.59583e-88
whv3_11010_g03f 2012 5' Shoot grown under cold condition for 3days 735bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.50287e-98
whv3_14010_g03f 2012 5' Shoot grown under cold condition for 3days 767bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.81164e-98
whv3_11010_g03r 2012 3' Shoot grown under cold condition for 3days 627bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 349 3.72241e-94
whv3_14010_g03r 2012 3' Shoot grown under cold condition for 3days 703bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 349 4.81737e-94
whv3_16041_g10f 2012 5' Shoot grown under cold condition for 3days 742bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.56835e-98
whv3_16041_g10r 2012 3' Shoot grown under cold condition for 3days 683bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 348 1.30152e-93
whv3_16058_g15f 2012 5' Shoot grown under cold condition for 3days 746bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.63382e-98
whv3_16058_g15r 2012 3' Shoot grown under cold condition for 3days 676bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 339 3.46649e-91
whv3_17074_g20f 2012 5' Shoot grown under cold condition for 3days 381bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 73 2.80363e-11
whv3_18074_g20r 2012 3' Shoot grown under cold condition for 3days 349bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 88 8.50009e-16
whv3_16010_h04f 2012 5' Shoot grown under cold condition for 3days 758bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.76477e-98
whv3_16010_h04r 2012 3' Shoot grown under cold condition for 3days 666bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 343 4.02217e-92
whv3_15025_h06f 2012 5' Shoot grown under cold condition for 3days 727bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.4374e-98
whv3_15025_h06r 2012 3' Shoot grown under cold condition for 3days 645bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 337 2.00409e-90
whv3_19026_h07f 2012 5' Shoot grown under cold condition for 3days 333bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 73 2.78597e-11
whv3_19026_h07r 2012 3' Shoot grown under cold condition for 3days 316bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 93 1.96612e-17
whv3_15026_h08f 2012 5' Shoot grown under cold condition for 3days 759bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.76477e-98
whv3_15026_h08r 2012 3' Shoot grown under cold condition for 3days 665bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 308 8.30958e-82
whv3_5041_h09r 2012 3' Shoot grown under cold condition for 3days 699bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 334 1.20284e-89
whv3_14041_h10f 2012 5' Shoot grown under cold condition for 3days 661bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 302 5.81656e-80
whv3_14041_h10r 2012 3' Shoot grown under cold condition for 3days 632bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 315 5.9282e-84
whv3_3042_h11f 2012 5' Shoot grown under cold condition for 3days 695bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.12513e-98
whv3_3042_h11r 2012 3' Shoot grown under cold condition for 3days 692bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 341 1.25835e-91
whv3_13008_i03f 2012 5' Shoot grown under cold condition for 3days 697bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.15803e-98
whv3_17008_i03f 2012 5' Shoot grown under cold condition for 3days 626bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 2.45785e-98
whv3_13008_i03r 2012 3' Shoot grown under cold condition for 3days 684bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 339 3.58333e-91
whv3_18008_i03r 2012 3' Shoot grown under cold condition for 3days 674bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 343 4.04883e-92
whv3_15024_i08f 2012 5' Shoot grown under cold condition for 3days 716bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.30645e-98
whv3_15024_i08r 2012 3' Shoot grown under cold condition for 3days 595bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 269 3.26416e-70
whv3_4056_i15f 2012 5' Shoot grown under cold condition for 3days 693bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.09224e-98
whv3_3072_i20f 2012 5' Shoot grown under cold condition for 3days 654bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 2.74358e-98
whv3_3072_i20r 2012 3' Shoot grown under cold condition for 3days 688bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 337 2.3479e-90
whv3_11008_j03f 2012 5' Shoot grown under cold condition for 3days 667bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 284 2.2173e-74
whv3_11008_j03r 2012 3' Shoot grown under cold condition for 3days 657bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 299 4.86539e-79
whv3_15023_j06f 2012 5' Shoot grown under cold condition for 3days 765bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.77906e-98
whv3_15023_j06r 2012 3' Shoot grown under cold condition for 3days 624bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 318 8.94483e-85
whv3_13024_j08f 2012 5' Shoot grown under cold condition for 3days 575bp Contig6435       RecName:Full=Ribulosebisphosphatecarboxylasesmallchainclone512;Short=RuBisCOsmallsubunit 217 1.71549e-54
whv3_20024_j08f 2012 5' Shoot grown under cold condition for 3days 697bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 330 2.24482e-88
whv3_13024_j08r 2012 3' Shoot grown under cold condition for 3days 568bp Contig6435       RecName:Full=Ribulosebisphosphatecarboxylasesmallchainclone512;Short=RuBisCOsmallsubunit 236 3.44567e-60
whv3_20024_j08r 2012 3' Shoot grown under cold condition for 3days 668bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 343 4.02217e-92
whv3_10039_j10f 2012 5' Shoot grown under cold condition for 3days 694bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 363 3.12513e-98
whv3_10039_j10r 2012 3' Shoot grown under cold condition for 3days 632bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 315 5.9282e-84
whv3_20087_j21r 2012 3' Shoot grown under cold condition for 3days 663bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 339 3.32669e-91
whv3_1005_k01f 2012 5' Shoot grown under cold condition for 3days 287bp Contig6435       predictedprotein[Hordeumvulgaresubsp.vulgare] 179 3.67694e-43
whv3_1005_k01r 2012 3' Shoot grown under cold condition for 3days 645bp Contig6435       ribulose-1,5-bisphosphatecarboxylase/oxygenasesmallsubunit[Triticumaestivum] 297 1.34739e-78
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