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cDNA BLAST Tissue specific clones complex contig list (2012) Query Form  -------------------------- How to use Virtual Display (2012)  -------------------------- Related Sites Download

cDNA

List
*1 Contig derived from a single library   *2 Contig derived from multiple libraries
Hit Count : 107
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Accession Clone Registered year Dir. Tissue Sequence Contig*1 Contig*2 Homology (BLAST)
Swiss-Prot nr
Top hit GO ID Term Top hit (Definition) score E-Value
whdl_18035_e15f 2012 5' Crown of seedling 427bp Contig20515       ribosomalproteinL11[Triticumaestivum] 279 2.57519e-73
whdl_18035_e15r 2012 3' Crown of seedling 490bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 269 3.48396e-70
whdl_25092_h06f 2012 5' Crown of seedling 529bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 220 2.07298e-55
whdl_25092_h06r 2012 3' Crown of seedling 489bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 222 4.88407e-56
whdl_2014_l07f 2012 5' Crown of seedling 421bp Contig20515       ribosomalproteinL11[Triticumaestivum] 279 2.59693e-73
whdl_19030_l14f 2012 5' Crown of seedling 465bp Contig20515       ribosomalproteinL11[Triticumaestivum] 306 2.59746e-81
whdl_19030_l14r 2012 3' Crown of seedling 546bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 290 1.35351e-76
whdl_26080_p23f 2012 5' Crown of seedling 495bp Contig20515       ribosomalproteinL11[Triticumaestivum] 331 5.66387e-89
whdl_26080_p23r 2012 3' Crown of seedling 509bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 279 3.37411e-73
whdp_20031_b06r 2012 3' Seed DPA20 571bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 292 4.12375e-77
whdp_12064_b16f 2012 5' Seed DPA20 555bp Contig20515       ribosomalproteinL11[Triticumaestivum] 358 7.46675e-97
whdp_12064_b16r 2012 3' Seed DPA20 617bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 312 6.23467e-83
whdp_19014_c04f 2012 5' Seed DPA20 515bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 336 1.39109e-90
whdp_19014_c04r 2012 3' Seed DPA20 557bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 300 1.84768e-79
whdp_12026_g07r 2012 3' Seed DPA20 267bp Contig20515       PREDICTED:60SribosomalproteinL11-like[Brachypodiumdistachyon] 101 7.34931e-20
whdp_1053_l13f 2012 5' Seed DPA20 571bp Contig20515       ribosomalproteinL11[Triticumaestivum] 353 2.571e-95
whdp_1053_l13r 2012 3' Seed DPA20 521bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 294 6.18083e-78
whdp_1053_l14r 2012 3' Seed DPA20 149bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 98 8.26629e-19
whei_6055_i13r 2012 3' Dormant seed with water absorption after breaking 581bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 262 3.68323e-68
whei_3052_n16f 2012 5' Dormant seed with water absorption after breaking 502bp Contig20515       ribosomalproteinL11[Triticumaestivum] 315 4.16167e-84
whei_3052_n16r 2012 3' Dormant seed with water absorption after breaking 568bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 293 2.37516e-77
whem_4031_a05f 2012 5' Dormant seed with water absorption 478bp Contig20515       ribosomalproteinL11[Triticumaestivum] 311 6.07337e-83
whem_5031_a05f 2012 5' Dormant seed with water absorption 270bp Contig20515       ribosomalproteinL11[Triticumaestivum] 157 1.46879e-36
whem_4031_a05r 2012 3' Dormant seed with water absorption 547bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 294 7.3234e-78
whem_8032_a07f 2012 5' Dormant seed with water absorption 164bp Contig20515            
whem_8032_a07r 2012 3' Dormant seed with water absorption 141bp Contig20515            
whf_9027_d08f 2012 5' Spike at flowering date 493bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 324 5.32567e-87
whf_9027_whr_d08r 2012 3' 552bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 266 2.22116e-69
whf_21079_o17f 2012 5' Spike at flowering date 307bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 197 9.7393e-49
whf_21079_o17r 2012 3' Spike at flowering date 522bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 279 3.50969e-73
whf_11089_p05f 2012 5' Spike at flowering date 401bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 266 2.26739e-69
whf_11089_p05r 2012 3' Spike at flowering date 325bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 195 4.89772e-48
whhg_18046_d12f 2012 5' Anther at meiosis of MT4B CS wheat 671bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 351 1.46986e-94
whhg_18046_d12r 2012 3' Anther at meiosis of MT4B CS wheat 649bp Contig20515       ribosomalproteinL11[Triticumaestivum] 360 2.23863e-97
whms_2095_a21r 2012 3' Seed DPA5 of DT3DL CS wheat 78bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 54 1.76373e-05
whms_20052_m16f 2012 5' Seed DPA5 of DT3DL CS wheat 617bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 291 4.46703e-78
whms_20052_m16r 2012 3' Seed DPA5 of DT3DL CS wheat 612bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 329 3.66738e-88
whoh_4066_a11f 2012 5' Pistil at heading date 425bp Contig20515       ribosomalproteinL11[Triticumaestivum] 281 8.88816e-74
whoh_4066_a11r 2012 3' Pistil at heading date 522bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 279 3.50969e-73
whoh_12035_e03r 2012 3' Pistil at heading date 567bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 269 4.79689e-70
whok_20061_c13f 2012 5' Seed DPA5 586bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 291 9.99262e-77
whok_20061_c13r 2012 3' Seed DPA5 560bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 314 1.25981e-83
whok_6024_j07f 2012 5' Seed DPA5 751bp Contig20515       ribosomalproteinL11[Triticumaestivum] 360 3.10393e-97
whok_6024_j07r 2012 3' Seed DPA5 735bp Contig20515       ribosomalproteinL11[Triticumaestivum] 360 2.96536e-97
whok_14055_j14r 2012 3' Seed DPA5 686bp Contig20515       ribosomalproteinL11[Triticumaestivum] 360 2.56204e-97
whr_2083_b18f 2012 5' Root 428bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 279 1.97175e-73
whr_11044_h09f 2012 5' Root 578bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 356 3.14359e-96
whr_11044_h09r 2012 3' Root 505bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 269 3.50799e-70
whr_18023_j20f 2012 5' Root 542bp Contig20515       ribosomalproteinL11[Triticumaestivum] 360 1.39755e-97
whr_18023_j20r 2012 3' Root 590bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 293 2.67205e-77
whsc_8093_c21r 2012 3' Shoot grown with cold treatment 522bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 293 1.79835e-77
whsc_10004_n04f 2012 5' Shoot grown with cold treatment 559bp Contig20515       ribosomalproteinL11[Triticumaestivum] 360 1.53289e-97
whsc_10004_n04r 2012 3' Shoot grown with cold treatment 570bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 293 2.37516e-77
whsd_4032_a07f 2012 5' Shoot grown with dessication 518bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 343 1.5225e-92
whsd_4032_a07r 2012 3' Shoot grown with dessication 594bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 281 8.30074e-74
whsd_17039_i10f 2012 5' Shoot grown with dessication 627bp Contig20515       ribosomalproteinL11[Triticumaestivum] 360 2.0807e-97
whsd_17039_i10r 2012 3' Shoot grown with dessication 563bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 300 1.9174e-79
whsh_2093_k18f 2012 5' - 540bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 338 4.26563e-91
whsh_2093_k18r 2012 3' - 593bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 293 2.71447e-77
whsl_22068_f05f 2012 5' Seed DPA30 188bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 123 3.12843e-26
whsl_22068_f05r 2012 3' Seed DPA30 297bp Contig20515       PREDICTED:60SribosomalproteinL11-like[Brachypodiumdistachyon] 70 2.37103e-10
whsl_13079_o11r 2012 3' Seed DPA30 118bp Contig20515            
whsp_5030_c08r 2012 3' 283bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 193 2.38127e-47
whsp_7077_d18f 2012 5' 537bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 356 1.4821e-96
whsp_7077_d18r 2012 3' 664bp Contig20515       ribosomalproteinL11[Triticumaestivum] 360 2.40653e-97
whsp_13058_h16f 2012 5' 565bp Contig20515       ribosomalproteinL11[Triticumaestivum] 360 1.58966e-97
whsp_13058_h16r 2012 3' 524bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 294 6.32799e-78
whxa_8025_g06f 2012 5' Root 415bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 275 3.66106e-72
whxa_8025_g06r 2012 3' Root 636bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 354 9.05266e-96
whxa_23057_h14f 2012 5' Root 682bp Contig20515       ribosomalproteinL11[Triticumaestivum] 360 2.53419e-97
whxa_6023_i05f 2012 5' Root 378bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 250 1.68018e-64
whxa_6023_i05r 2012 3' Root 585bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 293 2.62964e-77
whxb_32015_b02f 2012 5' Root 635bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 291 1.21323e-76
whxb_32015_b02r 2012 3' Root 583bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 267 1.49537e-69
whxb_18012_e03f 2012 5' Root 510bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 333 1.1489e-89
whxb_18012_e03r 2012 3' Root 635bp Contig20515       ribosomalproteinL11[Triticumaestivum] 360 2.1267e-97
whxb_22007_j02f 2012 5' Root 670bp Contig20515       ribosomalproteinL11[Triticumaestivum] 360 2.4228e-97
whxb_22007_j02r 2012 3' Root 642bp Contig20515       ribosomalproteinL11[Triticumaestivum] 360 2.18267e-97
whxb_39005_l01r 2012 3' Root 629bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 354 8.85995e-96
whxb_12036_n11f 2012 5' Root 400bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 265 5.05122e-69
whxb_12036_n11r 2012 3' Root 549bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 294 7.46986e-78
whxc_24014_d03f 2012 5' Root, treated at 50 microM Al for 6h 404bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 259 2.11354e-67
whxc_24014_d03r 2012 3' Root, treated at 50 microM Al for 6h 378bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 147 1.53383e-33
whxd_30013_d02f 2012 5' Root, treated at 50 microM Al for 6h 397bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 177 1.81649e-42
whxd_30013_d02r 2012 3' Root, treated at 50 microM Al for 6h 395bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 198 5.85363e-49
whxd_23026_h08r 2012 3' Root, treated at 50 microM Al for 6h 604bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 288 9.0979e-76
whxd_10008_j03r 2012 3' Root, treated at 50 microM Al for 6h 632bp Contig20515       ribosomalproteinL11[Triticumaestivum] 360 2.09872e-97
whxd_13070_k19f 2012 5' Root, treated at 50 microM Al for 6h 405bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 265 3.85178e-69
whxd_13070_k19r 2012 3' Root, treated at 50 microM Al for 6h 622bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 354 8.62368e-96
HX005264 whxi_1039_i10f 2012 5' Two-week old seedlingsi22Ž 16L-8Dj 46bp Contig20515            
HX005608 whxi_9087_i22r 2012 3' Two-week old seedlingsi22Ž 16L-8Dj 45bp Contig20515       PREDICTED:60SribosomalproteinL11-like[Brachypodiumdistachyon] 34 8.12226
HX053893 whxn_17078_c20f 2012 5' Leaves, plant was grown at constant 23Ž 208bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 131 8.62504e-29
HX053921 whxn_16078_c20r 2012 3' Leaves, plant was grown at constant 23Ž 601bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 288 6.86204e-76
HX067224 whxn_22052_m15f 2012 5' Leaves, plant was grown at constant 23Ž 634bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 343 2.69028e-92
HX067255 whxn_22052_m15r 2012 3' Leaves, plant was grown at constant 23Ž 603bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 290 1.83316e-76
HX118913 whxq_3085_k21f 2012 5' Leaves, seedling were infercted with blast strain Pr58 for 4 days (27Ž ) 593bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 265 6.06124e-69
HX118938 whxq_3085_k21r 2012 3' Leaves, seedling were infercted with blast strain Pr58 for 4 days (27Ž ) 591bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 288 6.5815e-76
HX157854 whxs_29070_l19f 2012 5' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 695bp Contig20515       ribosomalproteinL11[Triticumaestivum] 360 2.64559e-97
HX157880 whxs_29070_l19r 2012 3' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 531bp Contig20515       predictedprotein[Hordeumvulgaresubsp.vulgare] 245 3.52778e-63
HX188972 whxu_25027_f06f 2012 5' Roots, 18 day old plants were grown hydroponically (supplemented with 10 mM Boric Acid for 24 h) 711bp Contig20515       ChainE,LocalizationOfTheLargeSubunitRibosomalProteinsIntoA5.5ACryo-EmMapOfTriticumAestivumTranslating80sRibosome 348 8.38488e-94
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