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Species | Database | Institution | keyword |
Amphibian | Abteilung Molekulare Embryologie http://www.dkfz.de/de/mol_embryology/ |
DFKZ(Deutsches Krebsforschungszentrum) | |
Arabidopsis | Arabidopsis Information Portal https://www.araport.org/ |
collaborative project | |
Arabidopsis, Rice | ASIP Home http://www.plantgdb.org/ASIP/ |
University of Minnesota,Department of Genentics, Devlopement and Cell Biology | |
Barley | Barley DB http://shigen.nig.ac.jp/barley/ |
National Institute of Genetics | |
Birds | BBSRC ChickEST Database http://www.chick.manchester.ac.uk/ |
The University of Manchester | |
Drosophila | Berkeley Drosophila Genome Project http://www.fruitfly.org/ |
Consortium of the Drosophila Genome Center | |
Rice | BGI Rise Rice Genome Database http://rice.genomics.org.cn/rice/index2.jsp |
Beijing Genomics Institute (China) | |
Birds | Chicken Variation Database http://chicken.genomics.org.cn/ |
Bejing Genomics Institute | |
Algae (plants), Algae (Microbe) | Chlamy Connection http://www.chlamy.org/ |
Duke University | |
Tunicata/Chordata | Ciona intestinalis v2.0 http://genome.jgi-psf.org/Cioin2/Cioin2.home.html |
JGI | |
Tunicata/Chordata | Ciona savignyi Database http://www.broadinstitute.org/annotation/ciona/ |
Broad Institute | |
Cnidaria | CnidBase: Cnidarian Evolutionary Genomics Database http://cnidbase.org/index.cgi |
CnidBase | |
Actinomycetes | Corynebacterium diphtheriae http://www.sanger.ac.uk/resources/downloads/bacteria/corynebacterium-diphtheriae.html |
The Wellcome Trust Sanger Institute | |
Mouse, Human | COXPRESdb (co-expressed gene database) http://coxpresdb.jp/ |
The Institute of Medical Science, The University of Tokyo | |
Rice | CSRDB: Cereal small RNAs Database http://sundarlab.ucdavis.edu/smrnas/ |
NSF,UCDAVIS,USC | |
Plant.Others | Cucurbit Genomics Database http://www.icugi.org/cgi-bin/ICuGI/index.cgi |
BARD grants and the International Cucurbit Genomics Initiative (ICuGI) | |
Plant.Others | CUGI http://www.genome.clemson.edu/ |
Clemson University Genomics Institute | |
Plant.Others, Algae (plants), Microbe.Others | cyanobase http://genome.microbedb.jp/cyanobase/ |
Kazusa DNA Research Institute | |
Dictyostelium | dictyBase http://dictybase.org/ |
Northwestern University | |
E.coli | E.coli database collection - ECDC http://www.uni-giessen.de/ecoli/ECDC/ecdc.htm |
Justus-Liebig-University (Germany) | |
E.coli | E.coli Genome Project http://www.genome.wisc.edu |
University of Wisconsin-Madison | |
Mouse | EGTC(Database for the Exchangeable Gene Trap Clones) http://egtc.jp/action/main/index |
Institute of Resource Development and Analysis, Kumamoto University | |
Medakafish | Ensembl Medaka http://asia.ensembl.org/Oryzias_latipes/Info/Index?redirect=no |
EBI and WTSI | |
Zebrafish | Ensembl Zebrafish http://asia.ensembl.org/Danio_rerio/Info/Index?redirect=no |
The Wellcom Trust Sanger Institute | |
Amphibian | Ensembl Xenopus http://asia.ensembl.org/Xenopus_tropicalis/Info/Index?redirect=no |
The Wellcom Trust Sanger Institute | |
E.coli | Escherichia coli O157:H7 Sakai http://genome.bio.titech.ac.jp/bacteria/o157/ |
Nara Institute of Science and Technology | |
Pufferfish | Fugu Genome Project http://www.fugu-sg.org/ |
Fugu Genomics Project | |
Dictyostelium | GeneDB http://www.genedb.org/Homepage |
The Wellcome Trust, Sanger Institute | |
Actinomycetes | Genome Project of Streptomyces avermitilis http://avermitilis.ls.kitasato-u.ac.jp/ |
Kitasato University | |
Plant.Others, Mouse, Animal.Others, Microbe.Others | Genoscope http://www.genoscope.cns.fr/spip/ |
Genoscope France | |
Barley, Wheat, Plant.Others | GrainGenes http://wheat.pw.usda.gov/GG2/index.shtml |
ARS, USDA | |
Wheat | GrainGenes wEST-SQL Database http://wheat.pw.usda.gov/wEST/ |
US Department of Agriculture. (USDA) | |
Rice, Wheat | Gramene: A comparative resource for plants http://www.gramene.org/ |
USDA-ARS, Cold Spring Harbor, Conrnell University | |
Citrus | International Citrus Genome Consortium http://www.citrusgenome.ucr.edu/ |
International Citrus Genome Consortium (ICGC) | |
Arabidopsis | KAOS(Kazusa Arabidopsis data Opening Site) http://www.kazusa.or.jp/kaos/ |
Kazusa DNA Research Institute | |
E.coli | KEGG: Kyoto Encyclopedia of Genes and Genomes http://www.genome.jp/kegg/ |
Institute for Chemical Research,Kyoto University | |
Rice | Knowledge-based Oryza Molecular biological Encyclopedia (KOME) http://cdna01.dna.affrc.go.jp/cDNA/ |
National Institute of Agrobiological Sciences | |
Medakafish | M-Base(Medaka Genome Database) http://mbase.nig.ac.jp/mbase/medaka_top.html |
University of Tokyo | |
Plant.Others | Maize Genetics and Genomics Database http://www.maizegdb.org/ |
USDA Agricultural Reserach Service | |
Medakafish | Medaka Physical Map http://viewer.shigen.info/medakavw/mapview/mapView?chrNo=1&cStart=850001&cEnd=875000 |
Medaka Physical Map | |
Beans | medicago.org http://medicago.org/genome/index.php |
US/EU Medicago truncatula genome sequencing project | |
Medakafish | MEPD: Medaka Expression Pattern Database http://mepd.cos.uni-heidelberg.de/mepd/ |
Medaka Genome Initiative | |
Tomato | MiBASE Micro-Tom Database http://www.kazusa.or.jp/jsol/microtom/ |
Kazusa DNA Research Institute | |
Aquaculture | MitoFish http://mitofish.aori.u-tokyo.ac.jp/ |
Ocean Research Institute, The University of Tokyo | |
Beans, Plant.Others | miyakogusa.jp http://www.kazusa.or.jp/lotus/ |
Kazusa DNA Research Institute | |
Mouse | Mouse Genome Informatics (MGI) http://www.informatics.jax.org/ |
Jackson Laboratory | |
Actinomycetes | Mycobacterium http://www.sanger.ac.uk/resources/downloads/bacteria/mycobacterium.html |
The Wellcome Trust Sanger Institute | |
Medakafish | NIG DNA Sequencing Center -medaka site- http://dolphin.nig.ac.jp/medaka/index_jp.php |
National Institute of Genetics | |
Others | NRIB:Comprehensive Aspergillus oryzae Genome Database http://nribf21.nrib.go.jp/CFGD/ |
National Research Institute of Brewing | |
Rice | OryGenesDB http://orygenesdb.cirad.fr/index.html |
Centre de cooperation internationale en recherche agronomique pour le developpement |