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Species Database Institution keyword
Amphibian Abteilung Molekulare Embryologie
urlhttp://www.dkfz.de/de/mol_embryology/		 DFKZ(Deutsches Krebsforschungszentrum)  
Arabidopsis Arabidopsis Information Portal
urlhttps://www.araport.org/		 collaborative project  
Arabidopsis, Rice ASIP Home
urlhttp://www.plantgdb.org/ASIP/ 		University of Minnesota,Department of Genentics, Devlopement and Cell Biology  
Barley Barley DB
urlhttp://shigen.nig.ac.jp/barley/		 National Institute of Genetics  
Birds BBSRC ChickEST Database
urlhttp://www.chick.manchester.ac.uk/		 The University of Manchester  
Drosophila Berkeley Drosophila Genome Project
urlhttp://www.fruitfly.org/		 Consortium of the Drosophila Genome Center  
Rice BGI Rise Rice Genome Database
urlhttp://rice.genomics.org.cn/rice/index2.jsp		 Beijing Genomics Institute (China)  
Birds Chicken Variation Database
urlhttp://chicken.genomics.org.cn/		 Bejing Genomics Institute  
Algae (plants), Algae (Microbe) Chlamy Connection
urlhttp://www.chlamy.org/		 Duke University  
Tunicata/Chordata Ciona intestinalis v2.0
urlhttp://genome.jgi-psf.org/Cioin2/Cioin2.home.html		 JGI  
Tunicata/Chordata Ciona savignyi Database
urlhttp://www.broadinstitute.org/annotation/ciona/		 Broad Institute  
Cnidaria CnidBase: Cnidarian Evolutionary Genomics Database
urlhttp://cnidbase.org/index.cgi		 CnidBase  
Actinomycetes Corynebacterium diphtheriae
urlhttp://www.sanger.ac.uk/resources/downloads/bacteria/corynebacterium-diphtheriae.html		 The Wellcome Trust Sanger Institute  
Mouse, Human COXPRESdb (co-expressed gene database)
urlhttp://coxpresdb.jp/		 The Institute of Medical Science, The University of Tokyo  
Rice CSRDB: Cereal small RNAs Database
urlhttp://sundarlab.ucdavis.edu/smrnas/		 NSF,UCDAVIS,USC  
Plant.Others Cucurbit Genomics Database
urlhttp://www.icugi.org/cgi-bin/ICuGI/index.cgi		 BARD grants and the International Cucurbit Genomics Initiative (ICuGI)  
Plant.Others CUGI
urlhttp://www.genome.clemson.edu/		 Clemson University Genomics Institute  
Plant.Others, Algae (plants), Microbe.Others cyanobase
urlhttp://genome.microbedb.jp/cyanobase/		 Kazusa DNA Research Institute  
Dictyostelium dictyBase
urlhttp://dictybase.org/		 Northwestern University  
E.coli E.coli database collection - ECDC
urlhttp://www.uni-giessen.de/ecoli/ECDC/ecdc.htm		 Justus-Liebig-University　（Germany)  
E.coli E.coli Genome Project
urlhttp://www.genome.wisc.edu		 University of Wisconsin-Madison  
Mouse EGTC（Database for the Exchangeable Gene Trap Clones）
urlhttp://egtc.jp/action/main/index		 Institute of Resource Development and Analysis,　Kumamoto University  
Medakafish Ensembl Medaka
urlhttp://asia.ensembl.org/Oryzias_latipes/Info/Index?redirect=no		 EBI and WTSI  
Zebrafish Ensembl Zebrafish
urlhttp://asia.ensembl.org/Danio_rerio/Info/Index?redirect=no		 The Wellcom Trust Sanger Institute  
Amphibian Ensembl　Xenopus
urlhttp://asia.ensembl.org/Xenopus_tropicalis/Info/Index?redirect=no		 The Wellcom Trust Sanger Institute  
E.coli Escherichia coli O157:H7 Sakai
urlhttp://genome.bio.titech.ac.jp/bacteria/o157/		 Nara Institute of Science and Technology  
Pufferfish Fugu Genome Project
urlhttp://www.fugu-sg.org/		 Fugu Genomics Project  
Dictyostelium GeneDB
urlhttp://www.genedb.org/Homepage		 The Wellcome Trust, Sanger Institute  
Actinomycetes Genome Project of Streptomyces avermitilis
urlhttp://avermitilis.ls.kitasato-u.ac.jp/		 Kitasato University  
Plant.Others, Mouse, Animal.Others, Microbe.Others Genoscope
urlhttp://www.genoscope.cns.fr/spip/		 Genoscope France  
Barley, Wheat, Plant.Others GrainGenes
urlhttp://wheat.pw.usda.gov/GG2/index.shtml		 ARS, USDA  
Wheat GrainGenes wEST-SQL Database
urlhttp://wheat.pw.usda.gov/wEST/		 US Department of Agriculture. (USDA)  
Rice, Wheat Gramene: A comparative resource for plants
urlhttp://www.gramene.org/		 USDA-ARS, Cold Spring Harbor, Conrnell University  
Citrus International Citrus Genome Consortium
urlhttp://www.citrusgenome.ucr.edu/		 International Citrus Genome Consortium (ICGC)  
Arabidopsis KAOS(Kazusa Arabidopsis data Opening Site)
urlhttp://www.kazusa.or.jp/kaos/		 Kazusa DNA Research Institute  
E.coli KEGG: Kyoto Encyclopedia of Genes and Genomes
urlhttp://www.genome.jp/kegg/		 Institute for Chemical Research,Kyoto University  
Rice Knowledge-based Oryza Molecular biological Encyclopedia (KOME)
urlhttp://cdna01.dna.affrc.go.jp/cDNA/		 National Institute of Agrobiological Sciences  
Medakafish M-Base(Medaka Genome Database)
urlhttp://mbase.nig.ac.jp/mbase/medaka_top.html		 University of Tokyo  
Plant.Others Maize Genetics and Genomics Database
urlhttp://www.maizegdb.org/		 USDA Agricultural Reserach Service  
Medakafish Medaka Physical Map
urlhttp://viewer.shigen.info/medakavw/mapview/mapView?chrNo=1&cStart=850001&cEnd=875000		 Medaka Physical Map  
Beans medicago.org
urlhttp://medicago.org/genome/index.php		 US/EU Medicago truncatula genome sequencing project  
Medakafish MEPD: Medaka Expression Pattern Database
urlhttp://mepd.cos.uni-heidelberg.de/mepd/		 Medaka Genome Initiative  
Tomato MiBASE Micro-Tom Database
urlhttp://www.kazusa.or.jp/jsol/microtom/		 Kazusa DNA Research Institute  
Aquaculture MitoFish
urlhttp://mitofish.aori.u-tokyo.ac.jp/		 Ocean Research Institute, The University of Tokyo  
Beans, Plant.Others miyakogusa.jp
urlhttp://www.kazusa.or.jp/lotus/		 Kazusa DNA Research Institute  
Mouse Mouse Genome Informatics (MGI)
urlhttp://www.informatics.jax.org/		 Jackson Laboratory  
Actinomycetes Mycobacterium
urlhttp://www.sanger.ac.uk/resources/downloads/bacteria/mycobacterium.html		 The Wellcome Trust Sanger Institute  
Medakafish NIG DNA Sequencing Center -medaka site-
urlhttp://dolphin.nig.ac.jp/medaka/index_jp.php		 National Institute of Genetics  
Others NRIB：Comprehensive Aspergillus oryzae Genome Database
urlhttp://nribf21.nrib.go.jp/CFGD/		 National Research Institute of Brewing  
Rice OryGenesDB
urlhttp://orygenesdb.cirad.fr/index.html		 Centre de cooperation internationale en recherche agronomique pour le developpement