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Species | Database | Institution | keyword |
Drosophila | A Database of Drosophila Genes & Genomes http://flybase.org/ |
Center for Genomics,Proteomics and Bio informatics(CGPB) | |
Rice | About Next-Gen Sequence Databases http://mpss.udel.edu/#rice |
Blake Meyers Pamela Green Dept. of Plant &Soil Sciences Delaware Biotech Institute Univ. of Delaware | |
Forest Tree Breeding | Arborea http://www.arborea.ulaval.ca/en/ |
Université Laval | |
Rice | Arizona Genomics Institute (AGI) http://www.genome.arizona.edu/ |
Arizona Genomic Institute & Computational Laboratory | |
Arabidopsis, Rice | ASIP Home http://www.plantgdb.org/ASIP/ |
University of Minnesota,Department of Genentics, Devlopement and Cell Biology | |
Algae (plants), Algae (Microbe) | Chlamy Connection http://www.chlamy.org/ |
Duke University | |
Wheat | CMap for Wheat http://map2.nig.ac.jp/cmap/ |
CMAP | |
E.coli | Colibri http://genolist.pasteur.fr/Colibri/ |
Intstitut Pasteur | |
Rice | CSRDB: Cereal small RNAs Database http://sundarlab.ucdavis.edu/smrnas/ |
NSF,UCDAVIS,USC | |
Plant.Others | Cucurbit Genomics Database http://www.icugi.org/cgi-bin/ICuGI/index.cgi |
BARD grants and the International Cucurbit Genomics Initiative (ICuGI) | |
Plant.Others | CUGI http://www.genome.clemson.edu/ |
Clemson University Genomics Institute | |
E.coli | CyberCell Database: CCDB http://ccdb.wishartlab.com/CCDB/ |
Institute for Biomolecular Design Porject CyberCell | |
Dictyostelium | dictyBase http://dictybase.org/ |
Northwestern University | |
Drosophila | DrosDel: An isogenic deficiency kit for Drosophila melanogaster http://www.drosdel.org.uk/ |
Department of Genetics, University of Cambridge, UK | |
E.coli | E.coli database collection - ECDC http://www.uni-giessen.de/ecoli/ECDC/ecdc.htm |
Justus-Liebig-University (Germany) | |
Mouse | EGTC(Database for the Exchangeable Gene Trap Clones) http://egtc.jp/action/main/index |
Institute of Resource Development and Analysis, Kumamoto University | |
Medakafish | Ensembl Medaka http://asia.ensembl.org/Oryzias_latipes/Info/Index?redirect=no |
EBI and WTSI | |
Zebrafish | Ensembl Zebrafish http://asia.ensembl.org/Danio_rerio/Info/Index?redirect=no |
The Wellcom Trust Sanger Institute | |
B.subtilis | Entamoeba histolytica http://www.ncbi.nlm.nih.gov/genome?cmd=Retrieve&dopt=Overview&list_uids=27 |
NCBI | |
E.coli | Escherichia coli O157:H7 Sakai http://genome.bio.titech.ac.jp/bacteria/o157/ |
Nara Institute of Science and Technology | |
E.coli | Escherichia coli Transcription Factor Binding Sites http://bayesweb.wadsworth.org/binding_sites/index.html |
the Biometrics Laboratory of Wadsworth Center | |
Pufferfish | Genetic Map of Fugu (the Tiger Pufferfish) http://www.se.a.u-tokyo.ac.jp/Fugu-Map/map.html |
Fisheries Laboratory, Graduate School of Agricultural and Life Sciences, The University of Tokyo. | |
Rice | Genome - NCBI http://www.ncbi.nlm.nih.gov/genome?cmd=Retrieve&dopt=Overview&list_uids=11623 |
NCBI | |
Actinomycetes | Genome Project of Streptomyces avermitilis http://avermitilis.ls.kitasato-u.ac.jp/ |
Kitasato University | |
Yeast | Genome Statistics http://www.pombase.org/status/statistics |
The WellcomeTrust Sanger Institute | |
Barley, Wheat, Plant.Others | GrainGenes http://wheat.pw.usda.gov/GG2/index.shtml |
ARS, USDA | |
Wheat | GrainGenes wEST-SQL Database http://wheat.pw.usda.gov/wEST/ |
US Department of Agriculture. (USDA) | |
Rice, Wheat | Gramene: A comparative resource for plants http://www.gramene.org/ |
USDA-ARS, Cold Spring Harbor, Conrnell University | |
Yeast | Helmholtz Zentrum Munchen http://www.helmholtz-muenchen.de/en/ibis/institute/groups/fungal-microbial-genomics/resources/index.html |
MIPS | |
Rice | INtegrated rice genome Explorer (INE) http://ine.dna.affrc.go.jp/giot/ |
National Institute of Agrobiological Science | |
Rice | Knowledge-based Oryza Molecular biological Encyclopedia http://cdna01.dna.affrc.go.jp/cDNA/ |
National Institute of Agrobiological Sciences | |
Rice | Lactobacillus suebicus - Genome - NCBI http://www.ncbi.nlm.nih.gov/genome?cmd=Retrieve&dopt=Overview&list_uids=11591 |
NCBI | |
E.coli | Linkage Map of Escherichia coli K-12, Edition 10: The Physical Map http://mmbr.asm.org/content/62/3/985.abstract |
by Kenneth E. Rudd | |
E.coli | Linkage Map of Escherichia coli K-12, Edition 10: The Traditional Map http://mmbr.asm.org/content/62/3/814.abstract |
by Mary K.B.Berlyn | |
Medakafish | M-Base(Medaka Genome Database) http://mbase.nig.ac.jp/mbase/medaka_top.html |
University of Tokyo | |
Plant.Others | Maize Genetics and Genomics Database http://www.maizegdb.org/ |
USDA Agricultural Reserach Service | |
E.coli | MBGD http://mbgd.genome.ad.jp/ |
The University of Tokyo | |
Beans | medicago.org http://medicago.org/genome/index.php |
US/EU Medicago truncatula genome sequencing project | |
Rice | MGOS Community Database http://www.mgosdb.org/ |
PIs Cari Soderlund (UA), Marc Orbach (UA), and Barbara Valent (KSU) | |
B.subtilis | MICrobial Advanced Database Organization http://genome.jouy.inra.fr/cgi-bin/micado/index.cgi |
Institut National de la Recherche Agronomique(INRA) | |
Microbe.Others | Microbial Genome Database for Comparative Analysis http://mbgd.genome.ad.jp/ |
JSPS, BIRD-JST | |
Beans, Plant.Others | miyakogusa.jp http://www.kazusa.or.jp/lotus/ |
Kazusa DNA Research Institute | |
Mouse | Mouse Genome Informatics (MGI) http://www.informatics.jax.org/ |
Jackson Laboratory | |
Mouse | Mouse Polymophism DB http://shigen.nig.ac.jp/mouse/polymorphism/top/top.jsp |
National Institute of Genetics | |
Rice | OryGenesDB http://orygenesdb.cirad.fr/index.html |
Centre de cooperation internationale en recherche agronomique pour le developpement | |
Rice | Oryzabase http://shigen.nig.ac.jp/rice/oryzabase/ |
National Institute of Genetics (Japan) | |
Rice | Oryzabase http://shigen.nig.ac.jp/rice/oryzabase/comparativemap/about |
Oryzabase | |
E.coli | PEC (Profiling of E.coli Chromosome) http://shigen.nig.ac.jp/ecoli/pec/ |
National Institute of Genetics | |
Rice | PGAA http://idv.sinica.edu.tw/trees/PGAA/PGAA.htm |
Genomics Research Center, Academia Sinica, Taiwan | |
E.coli | PortEco http://porteco.org/ |
PortEco consortium |