Strains - Wild Strains - Wild Core Collection - Detail

Detail of Wild Core Collection

Basic information
Acc. No. W0120
Core collection rank 1
Biological information
Species O. rufipogon
Old Species Name O. perennis
Genome AA
SINE code AA110000
Search IRIS(IRRI) IRIS(IRRI)
IRGC101470 IRGC101475 IRGC100899
Evaluation of bacterial blight resistance reaction
( Results List )
bacterial leaf blight T7174(Reaction) HR
bacterial leaf blight T7133 (Reaction) S
DNA Marker DNA Marker data
DRA Acc. No. -
Phenotype
Anther length(mm) 3.63
Apiculus color Purple
Awn length(mm) 61.6
Grain weight of 20 0.35
Heading date 8/2-8/29
Hull color Black-White
Panicle type 3.4
Pericarp color Red
Plant height 97.4
Presence or absence of awn Presence
Seed fertility 16
Shedding degree index 2.2
Spikelet No. 80.3
Stigma color Purple
Stem No. 49.6
Fiscal year 2000
Phenotype image
History
Original place Cuttack, Orissa, India
Acquired from H.I. Oka
Year acquired(*Year registered) * 1958/4/1
Preservation
Preservation form SELFING,VEGETATIVELY
Seed stock volume more than 1000
Year multiplied 1 1990
Year multiplied 2 2000
Reference    >> Please submit your publication.
Wu Y, Zhao S, Li X, Zhang B, Jiang L, Tang Y, Zhao J, Ma X, Cai H, Sun C, Tan L.
Nat Commun  2018 9(1)   4157  
Deletions linked to PROG1 gene participate in plant architecture domestication in Asian and African rice.
[PubMed ID = 30297755
Shenton M, Iwamoto C, Kurata N, Ikeo K.
Rice (N Y)  2016 9(1)   42  
Effect of Wild and Cultivated Rice Genotypes on Rhizosphere Bacterial Community Composition.
[PubMed ID = 27557607
Kubo T, Takashi T, Ashikari M, Yoshimura A, Kurata N.
Mol Plant  2016 9(2)   221-232  
Two Tightly Linked Genes at the hsa1 Locus Cause Both F1 and F2 Hybrid Sterility in Rice.
[PubMed ID = 26455463
Niihama M, Mochizuki M, Kurata N, Nonomura K.
Breed. Sci.  2015 65(4)   357-61  
PCR-based INDEL markers co-dominant between Oryza sativa, japonica cultivars and closely-related wild Oryza species.
[PubMed ID = 26366120
Ishimaru K, Hirotsu N, Madoka Y, Murakami N, Hara N, Onodera H, Kashiwagi T, Ujiie K, Shimizu B, Onishi A, Miyagawa H, Katoh E.
Nat. Genet.  2013 45(6)   707-11  
Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield.
[PubMed ID = 23583977
Ogiso-Tanaka E, Matsubara K, Yamamoto S, Nonoue Y, Wu J, Fujisawa H, Ishikubo H, Tanaka T, Ando T, Matsumoto T, Yano M.
PLoS ONE  2013 8(10)   e75959  
Natural variation of the RICE FLOWERING LOCUS T 1 contributes to flowering time divergence in rice.
[PubMed ID = 24098411
Mizuta Y, Harushima Y, Kurata N.
Proc. Natl. Acad. Sci. U.S.A.  2010 107(47)   20417-22  
Rice pollen hybrid incompatibility caused by reciprocal gene loss of duplicated genes.
[PubMed ID = 21048083
Hattori Y, Nagai K, Furukawa S, Song XJ, Kawano R, Sakakibara H, Wu J, Matsumoto T, Yoshimura A, Kitano H, Matsuoka M, Mori H, Ashikari M.
Nature  2009 460(7258)   1026-30  
The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water.
[PubMed ID = 19693083
Karki S, Tsukiyama T, Okumoto Y, Rizal G, Naito K, Teraishi M, Nakazaki T, Tanisaka T.
Breed Sci.  2009 59   297-307  
Analysis of distribution and proliferation of mPing family transposons in a wild rice (Oryza rufipogon Griff.).
Suzaki T, Ohneda M, Toriba T, Yoshida A, Hirano HY.
PLoS Genet.  2009 5(10)   e1000693  
FON2 SPARE1 redundantly regulates floral meristem maintenance with FLORAL ORGAN NUMBER2 in rice.
[PubMed ID = 19834537
Hattori Y, Nagai K, Mori H, Kitano H, Matsuoka M, Ashikari M.
Breed Sci.  2008 58   39-46  
Mapping of three QTLs that regulate  internode elongation in deepwater rice.
Hattori, Y., Miura, K., Asano, K., Yamamoto, E., Mori, H., Kitano, H., Matsuoka, M., Ashikari, M.
Breed Sci.  2007 57   305-314  
A major QTL confers rapid internode elongation in response to water rise in deepwater rice.
Miyabayashi, T., Nonomura, K.I., Morishima, H., Kurata N.
Breed Sci.  2007 57   73-78  
Genome size of twenty wild Oryza Species determined by flow cytometric and chromosome analyses.
Xu JH, Cheng C, Tsuchimoto S, Ohtsubo H, Ohtsubo E.
Genes Genet. Syst.  2007 82(3)   217-29  
Phylogenetic analysis of Oryza rufipogon strains and their relations to Oryza sativa strains by insertion polymorphism of rice SINEs.
[PubMed ID = 17660692
Miyashita NT, Yoshida K, Ishii T.
Genes Genet. Syst.  2005 80(3)   173-83  
DNA variation in the metallothionein genes in wild rice Oryza rufipogon: relationship between DNA sequence polymorphism, codon bias and gene expression.
[PubMed ID = 16172530
Xu JH, Kurata N, Akimoto M, Ohtsubo H, Ohtsubo E.
Genes Genet. Syst.  2005 80(2)   129-34  
Identification and characterization of Australian wild rice strains of Oryza meridionalis and Oryza rufipogon by SINE insertion polymorphism.
[PubMed ID = 16172525
Nagano H, Onishi K, Ogasawara M, Horiuchi Y, Sano Y.
Genes Genet. Syst.  2005 80(5)   351-6  
Genealogy of the "Green Revolution" gene in rice.
[PubMed ID = 16394586
Nishikawa T, Vaughan DA, Kadowaki K.
Theor. Appl. Genet.  2005 110(4)   696-705  
Phylogenetic analysis of Oryza species, based on simple sequence repeats and their flanking nucleotide sequences from the mitochondrial and chloroplast genomes.
[PubMed ID = 15650813
Cai HW, Wang XK, Morishima H.
Heredity (Edinb)  2004 92(5)   409-17  
Comparison of population genetic structures of common wild rice (Oryza rufipogon Griff.), as revealed by analyses of quantitative traits, allozymes, and RFLPs.
[PubMed ID = 14997180
Inukai T, Sano Y.
Genome  2002 45(3)   493-502  
Sequence rearrangement in the AT-rich minisatellite of the novel rice transposable element Basho.
[PubMed ID = 12033618
H.I. Oka
1957
Report of study-tour to India for collection of rice, 1957
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