Strains - Wild Strains - Wild Core Collection - Detail

Detail of Wild Core Collection

Basic information
Acc. No. W0120
Core collection rank 1
Biological information
Species O. rufipogon
Old Species Name O. perennis
Genome AA
SINE code AA110000
IRIS(IRRI)
IRGC101470 IRGC101475 IRGC100899
Evaluation of bacterial blight resistance reaction
( Results List ) 		bacterial leaf blight T7174(Reaction) HR
bacterial leaf blight T7133 (Reaction) S
DNA Marker DNA Marker data
DRA Acc. No. -
Phenotype
Anther length(mm) 3.63
Apiculus color Purple
Awn length(mm) 61.6
Grain weight of 20 0.35
Heading date 8/2-8/29
Hull color Black-White
Panicle type 3.4
Pericarp color Red
Plant height 97.4
Presence or absence of awn Presence
Seed fertility 16
Shedding degree index 2.2
Spikelet No. 80.3
Stigma color Purple
Stem No. 49.6
Fiscal year 2000
Phenotype image
History
Original place Cuttack, Orissa, India
Acquired from H.I. Oka
Year acquired(*Year registered) * 1958/4/1
Preservation
Preservation form SELFING,VEGETATIVELY
Seed stock volume more than 1000
Year multiplied 1 1990
Year multiplied 2 2000
Reference    >> Please submit your publication.
Keisuke Kariya, Haruka Mori, Makoto Ueno, Takanori Yoshikawa, Masayoshi Teraishi, Yukinori Yabuta, Kotomi Ueno, Atsushi Ishihara
The Plant Journal  2024 118   358-372  
Identification and evolution of a diterpenoid phytoalexin oryzalactone biosynthetic gene in the genus <i>Oryza</i>
[PubMed ID = 38194491] 
Kariya K, Ube N, Ueno M, Teraishi M, Okumoto Y, Mori N, Ueno K, Ishihara A.
Phytochemistry  2020 180   112518  
Natural variation of diterpenoid phytoalexins in cultivated and wild rice species.
[PubMed ID = 32950772] 
Murata K, Kitano T, Yoshimoto R, Takata R, Ube N, Ueno K, Ueno M, Yabuta Y, Teraishi M, Holland CK, Jander G, Okumoto Y, Mori N, Ishihara A.
Plant J  2020 101(5)   1103-1117  
Natural variation in the expression and catalytic activity of a naringenin 7-O-methyltransferase influences antifungal defenses in diverse rice cultivars.
[PubMed ID = 31630460] 
Kariya K, Murata K, Kokubo Y, Ube N, Ueno K, Yabuta Y, Teraishi M, Okumoto Y, Mori N, Ishihara A.
Phytochemistry  2019 166   112057  
Variation of diterpenoid phytoalexin oryzalexin A production in cultivated and wild rice.
[PubMed ID = 31306913] 
Bakti C, Tanaka J.
Breed Sci  2019 69(1)   143-150  
Detection of dominant QTLs for stigma exsertion ratio in rice derived from <i>Oryza rufipogon</i> accession 'W0120'.
[PubMed ID = 31086492] 
Wu Y, Zhao S, Li X, Zhang B, Jiang L, Tang Y, Zhao J, Ma X, Cai H, Sun C, Tan L.
Nat Commun  2018 9(1)   4157  
Deletions linked to PROG1 gene participate in plant architecture domestication in Asian and African rice.
[PubMed ID = 30297755] 
Shenton M, Iwamoto C, Kurata N, Ikeo K.
Rice (N Y)  2016 9(1)   42  
Effect of Wild and Cultivated Rice Genotypes on Rhizosphere Bacterial Community Composition.
[PubMed ID = 27557607] 
Kubo T, Takashi T, Ashikari M, Yoshimura A, Kurata N.
Mol Plant  2016 9(2)   221-232  
Two Tightly Linked Genes at the hsa1 Locus Cause Both F1 and F2 Hybrid Sterility in Rice.
[PubMed ID = 26455463] 
Niihama M, Mochizuki M, Kurata N, Nonomura K.
Breed Sci  2015 65(4)   357-61  
PCR-based INDEL markers co-dominant between Oryza sativa, japonica cultivars and closely-related wild Oryza species.
[PubMed ID = 26366120] 
Yin H, Akimoto M, Kaewcheenchai R, Sotowa M, Ishii T, Ishikawa R.
Genes Genet Syst  2015 90(5)   269-81  
Inconsistent diversities between nuclear and plastid genomes of AA genome species in the genus Oryza.
[PubMed ID = 26687860] 
Yamaki S, Ohyanagi H, Yamasaki M, Eiguchi M, Miyabayashi T, Kubo T, Kurata N, Nonomura K.
Breed Sci  2013 63(3)   246-54  
Development of INDEL markers to discriminate all genome types rapidly in the genus Oryza.
[PubMed ID = 24273419] 
Ishimaru K, Hirotsu N, Madoka Y, Murakami N, Hara N, Onodera H, Kashiwagi T, Ujiie K, Shimizu B, Onishi A, Miyagawa H, Katoh E.
Nat Genet  2013 45(6)   707-11  
Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield.
[PubMed ID = 23583977] 
Ogiso-Tanaka E, Matsubara K, Yamamoto S, Nonoue Y, Wu J, Fujisawa H, Ishikubo H, Tanaka T, Ando T, Matsumoto T, Yano M.
PLoS One  2013 8(10)   e75959  
Natural variation of the RICE FLOWERING LOCUS T 1 contributes to flowering time divergence in rice.
[PubMed ID = 24098411] 
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B.
Nature  2012 490(7421)   497-501  
A map of rice genome variation reveals the origin of cultivated rice.
[PubMed ID = 23034647] 
Honma Y, Yoshida Y, Terachi T, Toriyama K, Mikami T, Kubo T.
Curr Genet  2011 57(4)   261-70  
Polymorphic minisatellites in the mitochondrial DNAs of Oryza and Brassica.
[PubMed ID = 21562713] 
Mizuta Y, Harushima Y, Kurata N.
Proc Natl Acad Sci U S A  2010 107(47)   20417-22  
Rice pollen hybrid incompatibility caused by reciprocal gene loss of duplicated genes.
[PubMed ID = 21048083] 
Yamaki S, Miyabayashi T, Eiguchi M, Kitano H, Nonomura K.I., Kurata N.
Breed Sci.  2010 60(5)   586-596  
Diversity of panicle branching patterns in wild relatives of rice.
Wu J, Fujisawa M, Tian Z, Yamagata H, Kamiya K, Shibata M, Hosokawa S, Ito Y, Hamada M, Katagiri S, Kurita K, Yamamoto M, Kikuta A, Machita K, Karasawa W, Kanamori H, Namiki N, Mizuno H, Ma J, Sasaki T, Matsumoto T.
Plant J  2009 60(5)   805-19  
Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure.
[PubMed ID = 19702669] 
Suzaki T, Ohneda M, Toriba T, Yoshida A, Hirano HY.
PLoS Genet  2009 5(10)   e1000693  
FON2 SPARE1 redundantly regulates floral meristem maintenance with FLORAL ORGAN NUMBER2 in rice.
[PubMed ID = 19834537] 
Hattori Y, Nagai K, Furukawa S, Song XJ, Kawano R, Sakakibara H, Wu J, Matsumoto T, Yoshimura A, Kitano H, Matsuoka M, Mori H, Ashikari M.
Nature  2009 460(7258)   1026-30  
The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water.
[PubMed ID = 19693083] 
H.I. Oka
1957
Report of study-tour to India for collection of rice, 1957
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