Strains - Wild Strains - Wild Core Collection - Detail

Detail of Wild Core Collection

Basic information
Acc. No. W0106
Core collection rank 1
Biological information
Species O. rufipogon
Old Species Name O. sativa spontanea
Genome AA
SINE code AA110000
Remarks Annual
IRIS(IRRI)
IRGC100206 IRGC100897
Evaluation of bacterial blight resistance reaction
( Results List ) 		bacterial leaf blight T7174(Reaction) R
bacterial leaf blight T7133 (Reaction) R
DNA Marker DNA Marker data
DRA Acc. No. -
Phenotype
Anther length(mm) 2.62
Apiculus color Purple
Awn length(mm) 79.9
Grain weight of 20 0.37
Heading date 7/24
Hull color Black
Panicle type 3.5
Pericarp color Red
Plant height 58.5
Presence or absence of awn Presence
Seed fertility 86.5
Shedding degree index 1
Spikelet No. 53.8
Stigma color Purple
Stem No. 112.5
Fiscal year 2000
Phenotype image
History
Original place Phulankara, near Cuttack, Orissa, India
Acquired from H.I. Oka
Year acquired(*Year registered) * 1958/4/1
Preservation
Preservation form SELFING
Seed stock volume more than 1000
Year multiplied 1 1996
Year multiplied 2 2000
Reference    >> Please submit your publication.
Sakamoto S, Yoshikawa T, Sato Y, Mori N.
Genes Genet Syst  2024 99  
β-Tyrosine and its biosynthetic enzyme TAM1 are predominantly distributed in the ancestral subpopulation of japonica rice in Oryza rufipogon.
[PubMed ID = 39034114] 
Keisuke Kariya, Haruka Mori, Makoto Ueno, Takanori Yoshikawa, Masayoshi Teraishi, Yukinori Yabuta, Kotomi Ueno, Atsushi Ishihara
The Plant Journal  2024 118   358-372  
Identification and evolution of a diterpenoid phytoalexin oryzalactone biosynthetic gene in the genus <i>Oryza</i>
[PubMed ID = 38194491] 
Kawai K, Takehara S, Kashio T, Morii M, Sugihara A, Yoshimura H, Ito A, Hattori M, Toda Y, Kojima M, Takebayashi Y, Furuumi H, Nonomura KI, Mikami B, Akagi T, Sakakibara H, Kitano H, Matsuoka M, Ueguchi-Tanaka M.
Commun Biol  2022 5(1)   67  
Evolutionary alterations in gene expression and enzymatic activities of gibberellin 3-oxidase 1 in Oryza.
[PubMed ID = 35046494] 
Itoh A, Nakazato S, Wakabayashi H, Hamano A, Shenton MR, Miyamoto K, Mitsuhashi W, Okada K, Toyomasu T.
Biosci Biotechnol Biochem  2021 85(9)   1945-1952  
Functional kaurene-synthase-like diterpene synthases lacking a gamma domain are widely present in Oryza and related species.
[PubMed ID = 34244709] 
Shin D, Lee S, Kim TH, Lee JH, Park J, Lee J, Lee JY, Cho LH, Choi JY, Lee W, Park JH, Lee DW, Ito H, Kim DH, Tanaka A, Cho JH, Song YC, Hwang D, Purugganan MD, Jeon JS, An G, Nam HG.
Nat Commun  2020 11(1)   2819  
Natural variations at the Stay-Green gene promoter control lifespan and yield in rice cultivars.
[PubMed ID = 32499482] 
Toyomasu T, Miyamoto K, Shenton MR, Sakai A, Sugawara C, Horie K, Kawaide H, Hasegawa M, Chuba M, Mitsuhashi W, Yamane H, Kurata N, Okada K.
Biochem Biophys Res Commun  2016 480(3)   402-408  
Characterization and evolutionary analysis of ent-kaurene synthase like genes from the wild rice species Oryza rufipogon.
[PubMed ID = 27771250] 
Miyamoto K, Fujita M, Shenton MR, Akashi S, Sugawara C, Sakai A, Horie K, Hasegawa M, Kawaide H, Mitsuhashi W, Nojiri H, Yamane H, Kurata N, Okada K, Toyomasu T.
Plant J  2016 87(3)   293-304  
Evolutionary trajectory of phytoalexin biosynthetic gene clusters in rice.
[PubMed ID = 27133567] 
Shenton MR, Ohyanagi H, Wang ZX, Toyoda A, Fujiyama A, Nagata T, Feng Q, Han B, Kurata N.
Mol Genet Genomics  2015 290(5)   1753-70  
Rapid turnover of antimicrobial-type cysteine-rich protein genes in closely related Oryza genomes.
[PubMed ID = 25842177] 
Furuta T, Komeda N, Asano K, Uehara K, Gamuyao R, Angeles-Shim RB, Nagai K, Doi K, Wang DR, Yasui H, Yoshimura A, Wu J, McCouch SR, Ashikari M.
G3 (Bethesda)  2015 5(11)   2267-74  
Convergent Loss of Awn in Two Cultivated Rice Species Oryza sativa and Oryza glaberrima Is Caused by Mutations in Different Loci.
[PubMed ID = 26338659] 
Niihama M, Mochizuki M, Kurata N, Nonomura K.
Breed Sci  2015 65(4)   357-61  
PCR-based INDEL markers co-dominant between Oryza sativa, japonica cultivars and closely-related wild Oryza species.
[PubMed ID = 26366120] 
Yin H, Akimoto M, Kaewcheenchai R, Sotowa M, Ishii T, Ishikawa R.
Genes Genet Syst  2015 90(5)   269-81  
Inconsistent diversities between nuclear and plastid genomes of AA genome species in the genus Oryza.
[PubMed ID = 26687860] 
Yamaki S, Ohyanagi H, Yamasaki M, Eiguchi M, Miyabayashi T, Kubo T, Kurata N, Nonomura K.
Breed Sci  2013 63(3)   246-54  
Development of INDEL markers to discriminate all genome types rapidly in the genus Oryza.
[PubMed ID = 24273419] 
Ishimaru K, Hirotsu N, Madoka Y, Murakami N, Hara N, Onodera H, Kashiwagi T, Ujiie K, Shimizu B, Onishi A, Miyagawa H, Katoh E.
Nat Genet  2013 45(6)   707-11  
Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield.
[PubMed ID = 23583977] 
Ogiso-Tanaka E, Matsubara K, Yamamoto S, Nonoue Y, Wu J, Fujisawa H, Ishikubo H, Tanaka T, Ando T, Matsumoto T, Yano M.
PLoS One  2013 8(10)   e75959  
Natural variation of the RICE FLOWERING LOCUS T 1 contributes to flowering time divergence in rice.
[PubMed ID = 24098411] 
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B.
Nature  2012 490(7421)   497-501  
A map of rice genome variation reveals the origin of cultivated rice.
[PubMed ID = 23034647] 
Nosaka M, Itoh J, Nagato Y, Ono A, Ishiwata A, Sato Y.
PLoS Genet  2012 8(9)   e1002953  
Role of transposon-derived small RNAs in the interplay between genomes and parasitic DNA in rice.
[PubMed ID = 23028360] 
Yang CC, Kawahara Y, Mizuno H, Wu J, Matsumoto T, Itoh T.
Mol Biol Evol  2012 29(5)   1471-9  
Independent domestication of Asian rice followed by gene flow from japonica to indica.
[PubMed ID = 22319137] 
Honma Y, Yoshida Y, Terachi T, Toriyama K, Mikami T, Kubo T.
Curr Genet  2011 57(4)   261-70  
Polymorphic minisatellites in the mitochondrial DNAs of Oryza and Brassica.
[PubMed ID = 21562713] 
Asano K, Yamasaki M, Takuno S, Miura K, Katagiri S, Ito T, Doi K, Wu J, Ebana K, Matsumoto T, Innan H, Kitano H, Ashikari M, Matsuoka M.
Proc Natl Acad Sci U S A  2011 108(27)   11034-9  
Artificial selection for a green revolution gene during japonica rice domestication.
[PubMed ID = 21646530] 
Fujino K, Sekiguchi H.
Plant Mol Biol  2011 75(1-2)   1-10  
Origins of functional nucleotide polymorphisms in a major quantitative trait locus, qLTG3-1, controlling low-temperature germinability in rice.
[PubMed ID = 20960223] 
H.I. Oka
1957
Report of study-tour to India for collection of rice, 1957
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