Strains - Wild Strains - Wild Core Collection - Detail

Detail of Wild Core Collection

Basic information
Acc. No. W0106
Core collection rank 1
Biological information
Species O. rufipogon
Old Species Name O. sativa spontanea
Genome AA
SINE code AA110000
Remarks Annual
IRGC100206 IRGC100897
Evaluation of bacterial blight resistance reaction
( Results List )
bacterial leaf blight T7174(Reaction) R
bacterial leaf blight T7133 (Reaction) R
DNA Marker DNA Marker data
DRA Acc. No. -
Anther length(mm) 2.62
Apiculus color Purple
Awn length(mm) 79.9
Grain weight of 20 0.37
Heading date 7/24
Hull color Black
Panicle type 3.5
Pericarp color Red
Plant height 58.5
Presence or absence of awn Presence
Seed fertility 86.5
Shedding degree index 1
Spikelet No. 53.8
Stigma color Purple
Stem No. 112.5
Fiscal year 2000
Phenotype image
Original place Phulankara, near Cuttack, Orissa, India
Acquired from H.I. Oka
Year acquired(*Year registered) * 1958/4/1
Preservation form SELFING
Seed stock volume more than 1000
Year multiplied 1 1996
Year multiplied 2 2000
Reference    >> Please submit your publication.
Toyomasu T, Miyamoto K, Shenton MR, Sakai A, Sugawara C, Horie K, Kawaide H, Hasegawa M, Chuba M, Mitsuhashi W, Yamane H, Kurata N, Okada K.
Biochem Biophys Res Commun  2016 480(3)   402-408  
Characterization and evolutionary analysis of ent-kaurene synthase like genes from the wild rice species Oryza rufipogon.
[PubMed ID = 27771250
Miyamoto K, Fujita M, Shenton MR, Akashi S, Sugawara C, Sakai A, Horie K, Hasegawa M, Kawaide H, Mitsuhashi W, Nojiri H, Yamane H, Kurata N, Okada K, Toyomasu T.
Plant J  2016 87(3)   293-304  
Evolutionary trajectory of phytoalexin biosynthetic gene clusters in rice.
[PubMed ID = 27133567
Furuta T, Komeda N, Asano K, Uehara K, Gamuyao R, Angeles-Shim RB, Nagai K, Doi K, Wang DR, Yasui H, Yoshimura A, Wu J, McCouch SR, Ashikari M.
G3 (Bethesda)  2015 5(11)   2267-74  
Convergent Loss of Awn in Two Cultivated Rice Species Oryza sativa and Oryza glaberrima Is Caused by Mutations in Different Loci.
[PubMed ID = 26338659
Shenton MR, Ohyanagi H, Wang ZX, Toyoda A, Fujiyama A, Nagata T, Feng Q, Han B, Kurata N.
Mol Genet Genomics  2015 290(5)   1753-70  
Rapid turnover of antimicrobial-type cysteine-rich protein genes in closely related Oryza genomes.
[PubMed ID = 25842177
Niihama M, Mochizuki M, Kurata N, Nonomura K.
Breed Sci  2015 65(4)   357-61  
PCR-based INDEL markers co-dominant between Oryza sativa, japonica cultivars and closely-related wild Oryza species.
[PubMed ID = 26366120
Ishimaru K, Hirotsu N, Madoka Y, Murakami N, Hara N, Onodera H, Kashiwagi T, Ujiie K, Shimizu B, Onishi A, Miyagawa H, Katoh E.
Nat Genet  2013 45(6)   707-11  
Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield.
[PubMed ID = 23583977
Ogiso-Tanaka E, Matsubara K, Yamamoto S, Nonoue Y, Wu J, Fujisawa H, Ishikubo H, Tanaka T, Ando T, Matsumoto T, Yano M.
PLoS One  2013 8(10)   e75959  
Natural variation of the RICE FLOWERING LOCUS T 1 contributes to flowering time divergence in rice.
[PubMed ID = 24098411
Yang CC, Kawahara Y, Mizuno H, Wu J, Matsumoto T, Itoh T.
Mol Biol Evol  2012 29(5)   1471-9  
Independent domestication of Asian rice followed by gene flow from japonica to indica.
[PubMed ID = 22319137
Nosaka M, Itoh J, Nagato Y, Ono A, Ishiwata A, Sato Y.
PLoS Genet  2012 8(9)   e1002953  
Role of transposon-derived small RNAs in the interplay between genomes and parasitic DNA in rice.
[PubMed ID = 23028360
Fujino K, Sekiguchi H.
Plant Mol Biol  2011 75(1-2)   1-10  
Origins of functional nucleotide polymorphisms in a major quantitative trait locus, qLTG3-1, controlling low-temperature germinability in rice.
[PubMed ID = 20960223
Fujino K, Wu J, Sekiguchi H, Ito T, Izawa T, Matsumoto T.
Mol Genet Genomics  2010 284(2)   137-46  
Multiple introgression events surrounding the Hd1 flowering-time gene in cultivated rice, Oryza sativa L.
[PubMed ID = 20607290
Hattori Y, Nagai K, Furukawa S, Song XJ, Kawano R, Sakakibara H, Wu J, Matsumoto T, Yoshimura A, Kitano H, Matsuoka M, Mori H, Ashikari M.
Nature  2009 460(7258)   1026-30  
The ethylene response factors SNORKEL1 and SNORKEL2 allow rice to adapt to deep water.
[PubMed ID = 19693083
Karki S, Tsukiyama T, Okumoto Y, Rizal G, Naito K, Teraishi M, Nakazaki T, Tanisaka T.
Breed Sci.  2009 59   297-307  
Analysis of distribution and proliferation of mPing family transposons in a wild rice (Oryza rufipogon Griff.).
Yamane H, Ito T, Ishikubo H, Fujisawa M, Yamagata H, Kamiya K, Ito Y, Hamada M, Kanamori H, Ikawa H, Katayose Y, Wu J, Sasaki T, Matsumoto T.
RICE  2008
Molecular and Evolutionary Analysis of the Hd6 Photoperiod Sensitivity Gene Within Genus Oryza.
Wu J, Mizuno H, Sasaki T, Matsumoto T.
RICE  2008 1   119-126  
Comparative Analysis of Rice Genome Sequence to Understand the Molecular Basis of Genome Evolution.
Tsuchimoto S, Hirao Y, Ohtsubo E, Ohtsubo H.
Genes Genet Syst  2008 83(3)   227-36  
New SINE families from rice, OsSN, with poly(A) at the 3' ends.
[PubMed ID = 18670134
Hattori, Y., Miura, K., Asano, K., Yamamoto, E., Mori, H., Kitano, H., Matsuoka, M., Ashikari, M.
Breed Sci.  2007 57   305-314  
A major QTL confers rapid internode elongation in response to water rise in deepwater rice.
Hass-Jacobus BL, Futrell-Griggs M, Abernathy B, Westerman R, Goicoechea JL, Stein J, Klein P, Hurwitz B, Zhou B, Rakhshan F, Sanyal A, Gill N, Lin JY, Walling JG, Luo MZ, Ammiraju JS, Kudrna D, Kim HR, Ware D, Wing RA, San Miguel P, Jackson SA.
BMC Genomics  2006 7   199  
Integration of hybridization-based markers (overgos) into physical maps for comparative and evolutionary explorations in the genus Oryza and in Sorghum.
[PubMed ID = 16895597
Ammiraju JS, Luo M, Goicoechea JL, Wang W, Kudrna D, Mueller C, Talag J, Kim H, Sisneros NB, Blackmon B, Fang E, Tomkins JB, Brar D, MacKill D, McCouch S, Kurata N, Lambert G, Galbraith DW, Arumuganathan K, Rao K, Walling JG, Gill N, Yu Y, SanMiguel P, Soderlund C, Jackson S, Wing RA.
Genome Res  2006 16(1)   140-7  
The Oryza bacterial artificial chromosome library resource: construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza.
[PubMed ID = 16344555
Wing RA, Ammiraju JS, Luo M, Kim H, Yu Y, Kudrna D, Goicoechea JL, Wang W, Nelson W, Rao K, Brar D, Mackill DJ, Han B, Soderlund C, Stein L, SanMiguel P, Jackson S.
Plant Mol Biol  2005 59(1)   53-62  
The oryza map alignment project: the golden path to unlocking the genetic potential of wild rice species.
[PubMed ID = 16217601
H.I. Oka
Report of study-tour to India for collection of rice, 1957
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