Strains - Wild Strains - Wild Core Collection - Detail

Detail of Wild Core Collection

Basic information
Acc. No. W0630
Core collection rank 2
Biological information
Species O. rufipogon
Old Species Name O. perennis (?)
Genome AA
SINE code AA110000
Remarks Annual
Evaluation of bacterial blight resistance reaction
( Results List )
bacterial leaf blight T7174(Reaction) S
bacterial leaf blight T7133 (Reaction) S
DNA Marker DNA Marker data
DRA Acc. No. DRA005599
Anther length(mm) 2.32
Apiculus color Purple
Awn length(mm) 88.6
Grain weight of 20 0.42
Heading date 2001.7.23-7.25
Hull color Black-White
Panicle length 17.7
Panicle type 4
Pericarp color Red
Plant height 66.6
Presence or absence of awn Presence
Seed fertility 73.7
Shedding degree index 1
Stigma color White
Stem No. 65.2
Fiscal year 2001
Phenotype image
Original place Magwe, Burma
Acquired from K. Katsuya
Year acquired(*Year registered) * 1960/1/12
Preservation form SELFING
Seed stock volume more than 1000
Year multiplied 1 1998
Year multiplied 2 2000
Reference    >> Please submit your publication.
Tsujimura Y, Sugiyama S, Otsuka K, Htun TM, Numaguchi K, Castillo C, Akagi T, Ishii T, Ishikawa R.
Theoretical and Applied Genetics  2019
Detection of a novel locus involved in non‑seed‑shattering behaviour
of Japonica rice cultivar, Oryza sativa ‘Nipponbare’
石川 亮 Ryo Ishikawa、杉山昇平 Shohei Sugiyama、
辻村雄紀 Yuki Tsujimura、沼口孝司 Koji Numaguchi、
クリスティーナ・コボ・カスティヨ Cristina Cobo Castillo、
石井尊生 Takashige Ishii。
アフロ・ユーラシアの考古植物学  2019 234-240  
Evaluation of the domesticationrelated
traits in rice:
plant genetics meets archaeobotany
アグリバイオ  2019 45-46  
野生イネOryza meridionalisの育種利用-イネ種子亜鉛濃度向上に向けて-
Ishii T, Ishikawa R.
Rice Genomics, Genetics and Breeding  2018
Domestication Loci Controlling Panicle Shape,
Seed Shattering, and Seed Awning
Ishikawa R, Iwata M, Taniko K, Monden G, Miyazaki N, Orn C, Tsujimura Y, Yoshida S, Ma JF, Ishii T.
PLoS ONE  2017
Detection of quantitative trait loci controlling grain zinc concentration using Australian wild rice, Oryza meridionalis, a potential genetic resource for biofortification of rice
Ikemoto M, Otsuka M, Thanh PT, Phan PDT, Ishikawa R. Ishii T.
Genes Genet. Syst.  2017 92   21-26  
Gene interaction at seed-awning loci in the genetic

background of wild rice
Ishikawa R, Watabe T, Nishioka R, Thanh PT, Ishii T.
Am J Plant Sci  2017 8   734-744  
Identification of Quantitative Trait Loci Controlling Floral Morphology of Rice Using a Backcross Population between Common Cultivated Rice, Oryza sativa and Asian Wild Rice, O. rufipogon
Ishikawa R, Nishimura A, Htun TM, Nishioka R, Oka Y, Tsujimura Y, Inoue C, Ishii T.
Genetica  2017 145(2)   201-207  
Estimation of loci involved in non-shattering of seeds in early rice domestication.
[PubMed ID = 28238052
Ikemoto M, Ohyagi T, Thanh PT, Ishikawa R, Ishii T.
The Society of Crop Science and Breeding in Kinki, Japan  2016 61号   13-17  
Evaluation of shooting and rooting ability from nodes and ratooning ability using backcross recombinant inbred lines between Oryza rufipogon and O. sativa
Inoue C, Htun TM, Inoue K, Ikeda K, Ishii T, Ishikawa R.
Genes Genet. Syst.  2015 90(1)   1-9  
Inhibition of abscission layer formation by an interaction of two seed-shattering loci, sh4 and qSH3, in rice.
[PubMed ID = 26119661
Htun TM, Inoue C, Chhourn O, Ishii T, Ishikawa R.
Breed. Sci.  2014 64(3)   199-205  
Effect of quantitative trait loci for seed shattering on abscission layer formation in Asian wild rice Oryza rufipogon.
[PubMed ID = 25320554
Mitani-Ueno N, Ogai H, Yamaji N, Ma JF.
Physiol Plant  2014 151(3)   200-7  
Physiological and molecular characterization of Si uptake in wild rice species.
[PubMed ID = 24320720
Jacquemin J, Bhatia D, Singh K, Wing RA.
Curr. Opin. Plant Biol.  2013 16(2)   147-56  
The International Oryza Map Alignment Project: development of a genus-wide comparative genomics platform to help solve the 9 billion-people question.
[PubMed ID = 23518283
Ishii T, Numaguchi K, Miura K, Yoshida K, Thanh PT, Htun TM, Yamasaki M, Komeda N, Matsumoto T, Terauchi R, Ishikawa R, Ashikari M.
Nat. Genet.  2013 45(4)   462-5, 465e1-2  
OsLG1 regulates a closed panicle trait in domesticated rice.
[PubMed ID = 23435087
Phan PD, Kageyama H, Ishikawa R, Ishii T.
Breed. Sci.  2012 62(3)   256-62  
Estimation of the outcrossing rate for annual Asian wild rice under field conditions.
[PubMed ID = 23226086
Thanh PT, Phan PDT, Mori N, Ishikawa R, Ishii T.
Breed Sci.  2011 61   76-79  
Development of backcross recombinant inbred lines between Oryza sativa Nipponbare and O. rufipogon and QTL detection on drought tolerance
Thanh PT, Phan PD, Ishikawa R, Ishii T.
Genes Genet. Syst.  2010 85(4)   273-9  
QTL analysis for flowering time using backcross population between Oryza sativa Nipponbare and O. rufipogon.
[PubMed ID = 21178307
Ishikawa R, Thanh PT, Nimura N, Htun TM, Yamasaki M, Ishii T.
Genes Genet. Syst.  2010 85(4)   265-71  
Allelic interaction at seed-shattering loci in the genetic backgrounds of wild and cultivated rice species.
[PubMed ID = 21178306
Takata M, Kishima Y, Sano Y.
Breed Sci.  2005 55   57-63  
DNA Methylation Polymorphisms in Rice and Wild Rice Strains: Detection of Epigenetic Markers
Miyashita NT, Yoshida K, Ishii T.
Genes Genet. Syst.  2005 80(3)   173-83  
DNA variation in the metallothionein genes in wild rice Oryza rufipogon: relationship between DNA sequence polymorphism, codon bias and gene expression.
[PubMed ID = 16172530
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