Strains - Wild Strains - Wild Core Collection - Detail

Detail of Wild Core Collection

Basic information
Acc. No. W0630
Core collection rank 2
Biological information
Species O. rufipogon
Old Species Name O. perennis (?)
Genome AA
SINE code AA110000
Remarks Annual
Evaluation of bacterial blight resistance reaction
( Results List )
bacterial leaf blight T7174(Reaction) S
bacterial leaf blight T7133 (Reaction) S
DNA Marker DNA Marker data
DRA Acc. No. DRA005599
Phenotype
Anther length(mm) 2.32
Apiculus color Purple
Awn length(mm) 88.6
Grain weight of 20 0.42
Heading date 2001.7.23-7.25
Hull color Black-White
Panicle length 17.7
Panicle type 4
Pericarp color Red
Plant height 66.6
Presence or absence of awn Presence
Seed fertility 73.7
Shedding degree index 1
Stigma color White
Stem No. 65.2
Fiscal year 2001
Phenotype image
History
Original place Magwe, Burma
Acquired from K. Katsuya
Year acquired(*Year registered) * 1960/1/12
Preservation
Preservation form SELFING
Seed stock volume more than 1000
Year multiplied 1 1998
Year multiplied 2 2000
Reference    >> Please submit your publication.
Keiko Hayashi, Tomofumi Yoshida, Tarou Suzuki, Masaharu Kuroda, Yuriko Hayano-Saito
Breeding Science  2025 75   139-146  
Identification of a candidate rice blast resistance gene, <i>Pior4</i>(t), in an introgression line of <i>Oryza rufipogon</i> using CRISPR/Cas9-mediated genome editing
Yohei Koide, Yoshiki Tokuyama, Miku Omachi, Shiori Kushida, Shuhei Okada, Minami Taguchi, Zin Mar Myint, Thet Hter San, Yuji Kishima, Kazumitsu Onishi
Genetic Resources and Crop Evolution  2024
GRAS-Di analysis on recombinant inbred lines derived from the cross between Asian cultivated and wild rice species suitable for agronomic evaluation in high-latitude areas
Ishikawa R.
Breed Sci  2024 74(4)   285-294  
Genetic dissection of a reduced seed-shattering trait acquired in rice domestication.
[PubMed ID = 39872329
Keisuke Kariya, Haruka Mori, Makoto Ueno, Takanori Yoshikawa, Masayoshi Teraishi, Yukinori Yabuta, Kotomi Ueno, Atsushi Ishihara
The Plant Journal  2024 118   358-372  
Identification and evolution of a diterpenoid phytoalexin oryzalactone biosynthetic gene in the genus <i>Oryza</i>
[PubMed ID = 38194491
Sugiyama S, Sakuta M, Tsujimura Y, Yamaguchi Y, Htun TM, Inoue C, Numaguchi K, Ishii T, Ishikawa R.
Mol Genet Genomics  2023 298(4)   943-953  
Detection of novel loci involved in non-seed-shattering behaviour of an indica rice cultivar, Oryza sativa IR36.
[PubMed ID = 37195447
Ryo Ishikawa, Cristina C. Castillo, Dorian Q. Fuller
Archaeological and Anthropological Sciences  2020 12  
Genetic evaluation of domestication-related traits in rice: implications for the archaeobotany of rice origins
Amarasinghe YPJ, Kuwata R, Nishimura A, Phan PDT, Ishikawa R, Ishii T.
Rice (N Y)  2020 13(1)   26  
Evaluation of Domestication Loci Associated with Awnlessness in Cultivated Rice, Oryza sativa.
[PubMed ID = 32347379
Tsujimura Y, Sugiyama S, Otsuka K, Htun TM, Numaguchi K, Castillo C, Akagi T, Ishii T, Ishikawa R.
Theor Appl Genet  2019 132(9)   2615-2623  
Detection of a novel locus involved in non-seed-shattering behaviour of Japonica rice cultivar, Oryzasativa 'Nipponbare'.
[PubMed ID = 31222437
石川 亮 Ryo Ishikawa、杉山昇平 Shohei Sugiyama、
辻村雄紀 Yuki Tsujimura、沼口孝司 Koji Numaguchi、
クリスティーナ・コボ・カスティヨ Cristina Cobo Castillo、
石井尊生 Takashige Ishii。
アフロ・ユーラシアの考古植物学  2019 234-240  
イネの栽培化関連形質の評価:
植物遺伝学と考古植物学との融和研究
Evaluation of the domesticationrelated
traits in rice:
plant genetics meets archaeobotany
宮崎直哉、石川亮
アグリバイオ  2019 45-46  
野生イネOryza meridionalisの育種利用-イネ種子亜鉛濃度向上に向けて-
Ishii T, Ishikawa R.
Rice Genomics, Genetics and Breeding  2018
Domestication Loci Controlling Panicle Shape,
Seed Shattering, and Seed Awning
Ikemoto M, Otsuka M, Thanh PT, Phan PDT, Ishikawa R, Ishii T.
Genes Genet Syst  2017 92(1)   21-26  
Gene interaction at seed-awning loci in the genetic background of wild rice.
[PubMed ID = 27941309
Ishikawa R, Nishimura A, Htun TM, Nishioka R, Oka Y, Tsujimura Y, Inoue C, Ishii T.
Genetica  2017 145(2)   201-207  
Estimation of loci involved in non-shattering of seeds in early rice domestication.
[PubMed ID = 28238052
Ishikawa R, Watabe T, Nishioka R, Thanh PT, Ishii T.
Am J Plant Sci  2017 8   734-744  
Identification of Quantitative Trait Loci Controlling Floral Morphology of Rice Using a Backcross Population between Common Cultivated Rice, Oryza sativa and Asian Wild Rice, O. rufipogon
Ishikawa R, Iwata M, Taniko K, Monden G, Miyazaki N, Orn C, Tsujimura Y, Yoshida S, Ma JF, Ishii T.
PLoS One  2017 12(10)   e0187224  
Detection of quantitative trait loci controlling grain zinc concentration using Australian wild rice, Oryza meridionalis, a potential genetic resource for biofortification of rice.
[PubMed ID = 29077764
Ikemoto M, Ohyagi T, Thanh PT, Ishikawa R, Ishii T.
The Society of Crop Science and Breeding in Kinki, Japan  2016 61号   13-17  
Evaluation of shooting and rooting ability from nodes and ratooning ability using backcross recombinant inbred lines between Oryza rufipogon and O. sativa
Kubo T, Takashi T, Ashikari M, Yoshimura A, Kurata N.
Mol Plant  2016 9(2)   221-232  
Two Tightly Linked Genes at the hsa1 Locus Cause Both F1 and F2 Hybrid Sterility in Rice.
[PubMed ID = 26455463
Yin H, Akimoto M, Kaewcheenchai R, Sotowa M, Ishii T, Ishikawa R.
Genes Genet Syst  2015 90(5)   269-81  
Inconsistent diversities between nuclear and plastid genomes of AA genome species in the genus Oryza.
[PubMed ID = 26687860
Inoue C, Htun TM, Inoue K, Ikeda K, Ishii T, Ishikawa R.
Genes Genet Syst  2015 90(1)   1-9  
Inhibition of abscission layer formation by an interaction of two seed-shattering loci, sh4 and qSH3, in rice.
[PubMed ID = 26119661
Htun TM, Inoue C, Chhourn O, Ishii T, Ishikawa R.
Breed Sci  2014 64(3)   199-205  
Effect of quantitative trait loci for seed shattering on abscission layer formation in Asian wild rice Oryza rufipogon.
[PubMed ID = 25320554
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