Strains - Wild Strains - Wild Core Collection - Detail

Detail of Wild Core Collection

Basic information
Acc. No. W1866
Core collection rank 1
Biological information
Species O. rufipogon
Old Species Name O. perennis
Genome AA
SINE code AA110000
IRIS(IRRI)
IRGC104650
Evaluation of bacterial blight resistance reaction
( Results List ) 		bacterial leaf blight T7174(Reaction) S
bacterial leaf blight T7133 (Reaction) S or R
DNA Marker DNA Marker data
DRA Acc. No. DRA005599
Phenotype
Anther length(mm) 2.89
Apiculus color Purple
Awn length(mm) 103.9
Grain weight of 20 0.47
Heading date 7/28-7/30
Hull color Black
Panicle type 3
Pericarp color Red
Plant height 97.4
Presence or absence of awn Presence
Seed fertility 86
Shedding degree index 1.6
Spikelet No. 52
Stigma color Purple
Stem No. 44
Fiscal year 2000
Phenotype image
History
Original place 14.57 N, 100.99 E, E of Saraburi, Thailand
Acquired from H. Morishima & group
Year acquired(*Year registered) * 1984/4/9
Preservation
Preservation form SELFING
Seed stock volume more than 1000
Year multiplied 1 1984
Year multiplied 2 2000
Reference    >> Please submit your publication.
Hoang Nam Nguyen, Takashige Ishii, Sachiyo Sanada-Morimura, Shao-Hui Zheng, Daisuke Fujita
Breeding Science  2025 75   455-462  
Identification and characterization of QTLs for brown planthopper resistance from wild rice, <i>Oryza rufipogon</i>
Keisuke Kariya, Haruka Mori, Makoto Ueno, Takanori Yoshikawa, Masayoshi Teraishi, Yukinori Yabuta, Kotomi Ueno, Atsushi Ishihara
The Plant Journal  2024 118   358-372  
Identification and evolution of a diterpenoid phytoalexin oryzalactone biosynthetic gene in the genus <i>Oryza</i>
[PubMed ID = 38194491] 
Kubo T, Takashi T, Ashikari M, Yoshimura A, Kurata N.
Mol Plant  2016 9(2)   221-232  
Two Tightly Linked Genes at the hsa1 Locus Cause Both F1 and F2 Hybrid Sterility in Rice.
[PubMed ID = 26455463] 
Yin H, Akimoto M, Kaewcheenchai R, Sotowa M, Ishii T, Ishikawa R.
Genes Genet Syst  2015 90(5)   269-81  
Inconsistent diversities between nuclear and plastid genomes of AA genome species in the genus Oryza.
[PubMed ID = 26687860] 
Yamaki S, Ohyanagi H, Yamasaki M, Eiguchi M, Miyabayashi T, Kubo T, Kurata N, Nonomura K.
Breed Sci  2013 63(3)   246-54  
Development of INDEL markers to discriminate all genome types rapidly in the genus Oryza.
[PubMed ID = 24273419] 
Ishimaru K, Hirotsu N, Madoka Y, Murakami N, Hara N, Onodera H, Kashiwagi T, Ujiie K, Shimizu B, Onishi A, Miyagawa H, Katoh E.
Nat Genet  2013 45(6)   707-11  
Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield.
[PubMed ID = 23583977] 
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B.
Nature  2012 490(7421)   497-501  
A map of rice genome variation reveals the origin of cultivated rice.
[PubMed ID = 23034647] 
Honma Y, Yoshida Y, Terachi T, Toriyama K, Mikami T, Kubo T.
Curr Genet  2011 57(4)   261-70  
Polymorphic minisatellites in the mitochondrial DNAs of Oryza and Brassica.
[PubMed ID = 21562713] 
Mizuta Y, Harushima Y, Kurata N.
Proc Natl Acad Sci U S A  2010 107(47)   20417-22  
Rice pollen hybrid incompatibility caused by reciprocal gene loss of duplicated genes.
[PubMed ID = 21048083] 
Yamaki S, Miyabayashi T, Eiguchi M, Kitano H, Nonomura K.I., Kurata N.
Breed Sci.  2010 60(5)   586-596  
Diversity of panicle branching patterns in wild relatives of rice.
Wu J, Fujisawa M, Tian Z, Yamagata H, Kamiya K, Shibata M, Hosokawa S, Ito Y, Hamada M, Katagiri S, Kurita K, Yamamoto M, Kikuta A, Machita K, Karasawa W, Kanamori H, Namiki N, Mizuno H, Ma J, Sasaki T, Matsumoto T.
Plant J  2009 60(5)   805-19  
Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure.
[PubMed ID = 19702669] 
Suzaki T, Ohneda M, Toriba T, Yoshida A, Hirano HY.
PLoS Genet  2009 5(10)   e1000693  
FON2 SPARE1 redundantly regulates floral meristem maintenance with FLORAL ORGAN NUMBER2 in rice.
[PubMed ID = 19834537] 
Karki S, Tsukiyama T, Okumoto Y, Rizal G, Naito K, Teraishi M, Nakazaki T, Tanisaka T.
Breed Sci.  2009 59   297-307  
Analysis of distribution and proliferation of mPing family transposons in a wild rice (Oryza rufipogon Griff.).
Kato H, Tezuka K, Feng YY, Kawamoto T, Takahashi H, Mori K, Akagi H.
Heredity (Edinb)  2007 99(5)   516-24  
Structural diversity and evolution of the Rf-1 locus in the genus Oryza.
[PubMed ID = 17622268] 
Miyabayashi, T., Nonomura, K.I., Morishima, H., Kurata N.
Breed Sci.  2007 57   73-78  
Genome size of twenty wild Oryza Species determined by flow cytometric and chromosome analyses.
H. Morishima, Y. Shimamoto, Y. Sano, Y.I. Sato
1983
Observations on wild and cultivated rices in Thailand for ecological-genetic study --Report of study-tour in 1983--
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