Strains - Wild Strains - Wild Core Collection - Detail

Detail of Wild Core Collection

Basic information
Acc. No. W1625
Core collection rank 1
Biological information
Species O. meridionalis
Old Species Name O. perennis
Genome AA
SINE code AA100010
Search IRIS(IRRI) IRIS(IRRI)
IRGC104085
Evaluation of bacterial blight resistance reaction
( Results List )
bacterial leaf blight T7174(Reaction) S
bacterial leaf blight T7133 (Reaction) S
DNA Marker DNA Marker data
DRA Acc. No. DRA004590
Phenotype
Anther length(mm) 2.05
Apiculus color Green
Awn length(mm) 112.8
Grain weight of 20 0.32
Heading date 7/28
Hull color Black
Panicle type 3.4
Pericarp color Red
Plant height 109
Presence or absence of awn Presence
Seed fertility 91.9
Shedding degree index 1
Spikelet No. 169.4
Stigma color Purple
Stem No. 31.6
Fiscal year 2000
Phenotype image
History
Original place 12.31 S, 131.19 E, 65K SE of Darwin, Australia
Acquired from H.I. Oka
Year acquired(*Year registered) * 1978/6/14
Preservation
Preservation form SELFING
Seed stock volume more than 1000
Year multiplied 1 1990
Year multiplied 2 2000
Reference    >> Please submit your publication.
Shenton M, Iwamoto C, Kurata N, Ikeo K.
Rice (N Y)  2016 9(1)   42  
Effect of Wild and Cultivated Rice Genotypes on Rhizosphere Bacterial Community Composition.
[PubMed ID = 27557607
Kubo T, Takashi T, Ashikari M, Yoshimura A, Kurata N.
Mol Plant  2016 9(2)   221-232  
Two Tightly Linked Genes at the hsa1 Locus Cause Both F1 and F2 Hybrid Sterility in Rice.
[PubMed ID = 26455463
Ishikawa R, Ohnishi T, Kinoshita Y, Eiguchi M, Kurata N, Kinoshita T.
Plant J.  2011 65(5)   798-806  
Rice interspecies hybrids show precocious or delayed developmental transitions in the endosperm without change to the rate of syncytial nuclear division.
[PubMed ID = 21251103
Yoshimura A, Nagayama H, Sobrizal, Kurakazu T, Sanchez P.L., Doi K, Yamagata Y, Yasui H.
Breed Sci.  2010 60(5)   597-603  
Introgression lines of rice (Oryza sativa L.) carrying a donor genome from the wild species, O. glumaepatula Steud. and O. meridionalis Ng.
Kumagai M, Wang L, Ueda S.
Gene  2010 462(1-2)   44-51  
Genetic diversity and evolutionary relationships in genus Oryza revealed by using highly variable regions of chloroplast DNA.
[PubMed ID = 20450965
Mizuta Y, Harushima Y, Kurata N.
Proc. Natl. Acad. Sci. U.S.A.  2010 107(47)   20417-22  
Rice pollen hybrid incompatibility caused by reciprocal gene loss of duplicated genes.
[PubMed ID = 21048083
Yamaki S, Miyabayashi T, Eiguchi M, Kitano H, Nonomura K.I., Kurata N.
Breed Sci.  2010 60(5)   586-596  
Diversity of panicle branching patterns in wild relatives of rice.
Karki S, Tsukiyama T, Okumoto Y, Rizal G, Naito K, Teraishi M, Nakazaki T, Tanisaka T.
Breed Sci.  2009 59   297-307  
Analysis of distribution and proliferation of mPing family transposons in a wild rice (Oryza rufipogon Griff.).
Suzaki T, Ohneda M, Toriba T, Yoshida A, Hirano HY.
PLoS Genet.  2009 5(10)   e1000693  
FON2 SPARE1 redundantly regulates floral meristem maintenance with FLORAL ORGAN NUMBER2 in rice.
[PubMed ID = 19834537
Wu J, Fujisawa M, Tian Z, Yamagata H, Kamiya K, Shibata M, Hosokawa S, Ito Y, Hamada M, Katagiri S, Kurita K, Yamamoto M, Kikuta A, Machita K, Karasawa W, Kanamori H, Namiki N, Mizuno H, Ma J, Sasaki T, Matsumoto T.
Plant J.  2009 60(5)   805-19  
Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure.
[PubMed ID = 19702669
Tsuchimoto S, Hirao Y, Ohtsubo E, Ohtsubo H.
Genes Genet. Syst.  2008 83(3)   227-36  
New SINE families from rice, OsSN, with poly(A) at the 3' ends.
[PubMed ID = 18670134
Wu J, Mizuno H, Sasaki T, Matsumoto T.
RICE  2008 1   119-126  
Comparative Analysis of Rice Genome Sequence to Understand the Molecular Basis of Genome Evolution.
Yamane H, Ito T, Ishikubo H, Fujisawa M, Yamagata H, Kamiya K, Ito Y, Hamada M, Kanamori H, Ikawa H, Katayose Y, Wu J, Sasaki T, Matsumoto T.
RICE  2008
Molecular and Evolutionary Analysis of the Hd6 Photoperiod Sensitivity Gene Within Genus Oryza.
Takahashi H, Sato YI, Nakamura I.
Breed Sci.  2008 58   225-233  
Evolutionary analysis of two plastid DNA sequences in cultivated and wild species of Oryza
Xu JH, Cheng C, Tsuchimoto S, Ohtsubo H, Ohtsubo E.
Genes Genet. Syst.  2007 82(3)   217-29  
Phylogenetic analysis of Oryza rufipogon strains and their relations to Oryza sativa strains by insertion polymorphism of rice SINEs.
[PubMed ID = 17660692
Xu JH, Kurata N, Akimoto M, Ohtsubo H, Ohtsubo E.
Genes Genet. Syst.  2005 80(2)   129-34  
Identification and characterization of Australian wild rice strains of Oryza meridionalis and Oryza rufipogon by SINE insertion polymorphism.
[PubMed ID = 16172525
Nishikawa T, Vaughan DA, Kadowaki K.
Theor. Appl. Genet.  2005 110(4)   696-705  
Phylogenetic analysis of Oryza species, based on simple sequence repeats and their flanking nucleotide sequences from the mitochondrial and chloroplast genomes.
[PubMed ID = 15650813
Xu JH, Osawa I, Tsuchimoto S, Ohtsubo E, Ohtsubo H.
Genes Genet. Syst.  2005 80(3)   161-71  
Two new SINE elements, p-SINE2 and p-SINE3, from rice.
[PubMed ID = 16172529
Takagi K, Nagano H, Kishima Y, Sano Y
Breed Sci.  2003 53   125-132  
MITE-transposon Display Efficiently Detects Polymorphisms among the Oryza AA-genome Species
Cheng C, Tsuchimoto S, Ohtsubo H, Ohtsubo E.
Genes Genet. Syst.  2002 77(5)   323-34  
Evolutionary relationships among rice species with AA genome based on SINE insertion analysis.
[PubMed ID = 12441643
H.I. Oka
1978
An observation of wild rice species in Tropical Australia. Report of trip, 1978
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