Strains - Wild Strains - Wild Core Collection - Detail

Detail of Wild Core Collection

Basic information
Acc. No. W2112 , OR44
Core collection rank 3
Biological information
Species O. meridionalis
Old Species Name O. rufipogon
Genome AA
SINE code AA100010
Remarks Strains characterized by p-SINE1 insertion polymorphism (Xu et al. Identification and characterization of Australian wild rice strains of Oryza meridionalis and Oryza rufipogon by SINE insertion polymorphism. GGS)
Evaluation of bacterial blight resistance reaction
( Results List )
bacterial leaf blight T7174(Reaction) S
bacterial leaf blight T7133 (Reaction) S
DNA Marker DNA Marker data
DRA Acc. No. DRA004590
Phenotype
Fiscal year 2000
History
Original place Queensland, Australia
Acquired from G. Second (ORSTOM)
Year acquired(*Year registered) * 1993/12/13
Preservation
Preservation form SELFING
Seed stock volume 100 to 1000
Year multiplied 2 1996
Reference    >> Please submit your publication.
Shimizu M, Hirabuchi A, Sugihara Y, Abe A, Takeda T, Kobayashi M, Hiraka Y, Kanzaki E, Oikawa K, Saitoh H, Langner T, Banfield MJ, Kamoun S, Terauchi R.
Proc Natl Acad Sci U S A  2022 119(27)   e2116896119  
A genetically linked pair of NLR immune receptors shows contrasting patterns of evolution.
[PubMed ID = 35771942
Kariya K, Ube N, Ueno M, Teraishi M, Okumoto Y, Mori N, Ueno K, Ishihara A.
Phytochemistry  2020 180   112518  
Natural variation of diterpenoid phytoalexins in cultivated and wild rice species.
[PubMed ID = 32950772
Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, Becker C, Kudrna D, Zhang J, Londono CEM, Song X, Lee S, Sanchez P, Zuccolo A, Ammiraju JSS, Talag J, Danowitz A, Rivera LF, Gschwend AR, Noutsos C, Wu CC, Kao SM, Zeng JW, Wei FJ, Zhao Q, Feng Q, El Baidouri M, Carpentier MC, Lasserre E, Cooke R, Rosa Farias DD, da Maia LC, Dos Santos RS, Nyberg KG, McNally KL, Mauleon R, Alexandrov N, Schmutz J, Flowers D, Fan C, Weigel D, Jena KK, Wicker T, Chen M, Han B, Henry R, Hsing YC, Kurata N, de Oliveira AC, Panaud O, Jackson SA, Machado CA, Sanderson MJ, Long M, Ware D, Wing RA.
Nat Genet  2018 50(2)   285-296  
Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza.
[PubMed ID = 29358651
Chen S, Zheng H, Kishima Y.
PLoS Pathog  2017 13(6)   e1006413  
Genomic fossils reveal adaptation of non-autonomous pararetroviruses driven by concerted evolution of noncoding regulatory sequences.
[PubMed ID = 28662199
Miyamoto K, Fujita M, Shenton MR, Akashi S, Sugawara C, Sakai A, Horie K, Hasegawa M, Kawaide H, Mitsuhashi W, Nojiri H, Yamane H, Kurata N, Okada K, Toyomasu T.
Plant J  2016 87(3)   293-304  
Evolutionary trajectory of phytoalexin biosynthetic gene clusters in rice.
[PubMed ID = 27133567
Yin H, Akimoto M, Kaewcheenchai R, Sotowa M, Ishii T, Ishikawa R.
Genes Genet Syst  2015 90(5)   269-81  
Inconsistent diversities between nuclear and plastid genomes of AA genome species in the genus Oryza.
[PubMed ID = 26687860
Xu JH, Kurata N, Akimoto M, Ohtsubo H, Ohtsubo E.
Genes Genet Syst  2005 80(2)   129-34  
Identification and characterization of Australian wild rice strains of Oryza meridionalis and Oryza rufipogon by SINE insertion polymorphism.
[PubMed ID = 16172525
Cheng C, Tsuchimoto S, Ohtsubo H, Ohtsubo E.
Genes Genet Syst  2002 77(5)   323-34  
Evolutionary relationships among rice species with AA genome based on SINE insertion analysis.
[PubMed ID = 12441643
G. Second
1987
Field notes on a collection of wild rice species in Australia, May 1987.
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