Strains - Wild Strains - Wild Core Collection - Detail

Detail of Wild Core Collection

Basic information
Acc. No. W1294
Core collection rank 1
Biological information
Species O. rufipogon
Old Species Name O. perennis
Genome AA
SINE code AA110000
Search IRIS(IRRI) IRIS(IRRI)
IRGC105568
Evaluation of bacterial blight resistance reaction
( Results List )
bacterial leaf blight T7174(Reaction) S
bacterial leaf blight T7133 (Reaction) S
DNA Marker DNA Marker data
DRA Acc. No. -
Phenotype
Anther length(mm) 4.04
Apiculus color Purple
Awn length(mm) 117.8
Grain weight of 20 0.45
Heading date 2001.7.30-7.31
Hull color Black
Panicle length 18.3
Panicle type 4.7
Pericarp color Red
Plant height 126.7
Presence or absence of awn Presence
Seed fertility 62.7
Shedding degree index 1
Stigma color Purple
Stem No. 40.3
Fiscal year 2001
Phenotype image
History
Original place Musuan, Mindanao, Philippines
Acquired from H.I. Oka
Year acquired(*Year registered) * 1963/6/18
Preservation
Preservation form SELFING
Seed stock volume more than 1000
Year multiplied 1 1998
Year multiplied 2 2000
Reference    >> Please submit your publication.
Kubo T, Takashi T, Ashikari M, Yoshimura A, Kurata N.
Mol Plant  2016 9(2)   221-232  
Two Tightly Linked Genes at the hsa1 Locus Cause Both F1 and F2 Hybrid Sterility in Rice.
[PubMed ID = 26455463
Kobayashi H.
The Bulletin of Okayama University of Science  2015 51A   53-56  
A study of the relationship between wild rice (Oryza rufipogon) and japonica rice varieties (Oryza sativa L.)
Yin H, Akimoto M, Kaewcheenchai R, Sotowa M, Ishii T, Ishikawa R.
Genes Genet Syst  2015 90(5)   269-81  
Inconsistent diversities between nuclear and plastid genomes of AA genome species in the genus Oryza.
[PubMed ID = 26687860
Ishimaru K, Hirotsu N, Madoka Y, Murakami N, Hara N, Onodera H, Kashiwagi T, Ujiie K, Shimizu B, Onishi A, Miyagawa H, Katoh E.
Nat Genet  2013 45(6)   707-11  
Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield.
[PubMed ID = 23583977
Ogiso-Tanaka E, Matsubara K, Yamamoto S, Nonoue Y, Wu J, Fujisawa H, Ishikubo H, Tanaka T, Ando T, Matsumoto T, Yano M.
PLoS One  2013 8(10)   e75959  
Natural variation of the RICE FLOWERING LOCUS T 1 contributes to flowering time divergence in rice.
[PubMed ID = 24098411
Yamaki S, Ohyanagi H, Yamasaki M, Eiguchi M, Miyabayashi T, Kubo T, Kurata N, Nonomura K.
Breed Sci  2013 63(3)   246-54  
Development of INDEL markers to discriminate all genome types rapidly in the genus Oryza.
[PubMed ID = 24273419
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B.
Nature  2012 490(7421)   497-501  
A map of rice genome variation reveals the origin of cultivated rice.
[PubMed ID = 23034647
Asano K, Yamasaki M, Takuno S, Miura K, Katagiri S, Ito T, Doi K, Wu J, Ebana K, Matsumoto T, Innan H, Kitano H, Ashikari M, Matsuoka M.
Proc Natl Acad Sci U S A  2011 108(27)   11034-9  
Artificial selection for a green revolution gene during japonica rice domestication.
[PubMed ID = 21646530
Mizuta Y, Harushima Y, Kurata N.
Proc Natl Acad Sci U S A  2010 107(47)   20417-22  
Rice pollen hybrid incompatibility caused by reciprocal gene loss of duplicated genes.
[PubMed ID = 21048083
Yamaki S, Miyabayashi T, Eiguchi M, Kitano H, Nonomura K.I., Kurata N.
Breed Sci.  2010 60(5)   586-596  
Diversity of panicle branching patterns in wild relatives of rice.
Karki S, Tsukiyama T, Okumoto Y, Rizal G, Naito K, Teraishi M, Nakazaki T, Tanisaka T.
Breed Sci.  2009 59   297-307  
Analysis of distribution and proliferation of mPing family transposons in a wild rice (Oryza rufipogon Griff.).
Suzaki T, Ohneda M, Toriba T, Yoshida A, Hirano HY.
PLoS Genet  2009 5(10)   e1000693  
FON2 SPARE1 redundantly regulates floral meristem maintenance with FLORAL ORGAN NUMBER2 in rice.
[PubMed ID = 19834537
Wu J, Fujisawa M, Tian Z, Yamagata H, Kamiya K, Shibata M, Hosokawa S, Ito Y, Hamada M, Katagiri S, Kurita K, Yamamoto M, Kikuta A, Machita K, Karasawa W, Kanamori H, Namiki N, Mizuno H, Ma J, Sasaki T, Matsumoto T.
Plant J  2009 60(5)   805-19  
Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure.
[PubMed ID = 19702669
Teranishi C, Yoshida K, Miyashita NT.
Genes Genet Syst  2008 83(5)   403-15  
DNA polymorphism in the SUPERWOMAN1 (SPW1) locus of the wild rice Oryza rufipogon and its related species.
[PubMed ID = 19168991
Miyabayashi, T., Nonomura, K.I., Morishima, H., Kurata N.
Breed Sci.  2007 57   73-78  
Genome size of twenty wild Oryza Species determined by flow cytometric and chromosome analyses.
Nagano H, Onishi K, Ogasawara M, Horiuchi Y, Sano Y.
Genes Genet Syst  2005 80(5)   351-6  
Genealogy of the "Green Revolution" gene in rice.
[PubMed ID = 16394586
Saitoh K, Onishi K, Mikami I, Thidar K, Sano Y.
Genetics  2004 168(2)   997-1007  
Allelic diversification at the C (OsC1) locus of wild and cultivated rice: nucleotide changes associated with phenotypes.
[PubMed ID = 15514070
Inukai T, Sano Y.
Genome  2002 45(3)   493-502  
Sequence rearrangement in the AT-rich minisatellite of the novel rice transposable element Basho.
[PubMed ID = 12033618
H.I. Oka, W.T. Chang
1963
Joint report of collection trip to Mindanao, Philippines (1963)
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