Strains - Wild Strains - Wild Core Collection - Detail

Detail of Wild Core Collection

Basic information
Acc. No. W1551
Core collection rank 3
Biological information
Species O. rufipogon
Old Species Name O. perennis
Genome AA
SINE code AA110000
IRIS(IRRI)
IRGC105601
Evaluation of bacterial blight resistance reaction
( Results List ) 		bacterial leaf blight T7174(Reaction) R
bacterial leaf blight T7133 (Reaction) R
DNA Marker DNA Marker data
DRA Acc. No. DRA005599
Phenotype
Fiscal year 2000
History
Original place Saraburi, Thailand
Acquired from K. Hamamura
Year acquired(*Year registered) * 1976/7/13
Preservation
Preservation form SELFING
Seed stock volume more than 1000
Year multiplied 1 1991
Year multiplied 2 1995
Reference    >> Please submit your publication.
Keisuke Kariya, Haruka Mori, Makoto Ueno, Takanori Yoshikawa, Masayoshi Teraishi, Yukinori Yabuta, Kotomi Ueno, Atsushi Ishihara
The Plant Journal  2024 118   358-372  
Identification and evolution of a diterpenoid phytoalexin oryzalactone biosynthetic gene in the genus <i>Oryza</i>
[PubMed ID = 38194491] 
Kubo T, Takashi T, Ashikari M, Yoshimura A, Kurata N.
Mol Plant  2016 9(2)   221-232  
Two Tightly Linked Genes at the hsa1 Locus Cause Both F1 and F2 Hybrid Sterility in Rice.
[PubMed ID = 26455463] 
Niihama M, Mochizuki M, Kurata N, Nonomura K.
Breed Sci  2015 65(4)   357-61  
PCR-based INDEL markers co-dominant between Oryza sativa, japonica cultivars and closely-related wild Oryza species.
[PubMed ID = 26366120] 
Yin H, Akimoto M, Kaewcheenchai R, Sotowa M, Ishii T, Ishikawa R.
Genes Genet Syst  2015 90(5)   269-81  
Inconsistent diversities between nuclear and plastid genomes of AA genome species in the genus Oryza.
[PubMed ID = 26687860] 
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B.
Nature  2012 490(7421)   497-501  
A map of rice genome variation reveals the origin of cultivated rice.
[PubMed ID = 23034647] 
Asano K, Yamasaki M, Takuno S, Miura K, Katagiri S, Ito T, Doi K, Wu J, Ebana K, Matsumoto T, Innan H, Kitano H, Ashikari M, Matsuoka M.
Proc Natl Acad Sci U S A  2011 108(27)   11034-9  
Artificial selection for a green revolution gene during japonica rice domestication.
[PubMed ID = 21646530] 
Yamaki S, Miyabayashi T, Eiguchi M, Kitano H, Nonomura K.I., Kurata N.
Breed Sci.  2010 60(5)   586-596  
Diversity of panicle branching patterns in wild relatives of rice.
Wu J, Fujisawa M, Tian Z, Yamagata H, Kamiya K, Shibata M, Hosokawa S, Ito Y, Hamada M, Katagiri S, Kurita K, Yamamoto M, Kikuta A, Machita K, Karasawa W, Kanamori H, Namiki N, Mizuno H, Ma J, Sasaki T, Matsumoto T.
Plant J  2009 60(5)   805-19  
Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure.
[PubMed ID = 19702669] 
Xu JH, Cheng C, Tsuchimoto S, Ohtsubo H, Ohtsubo E.
Genes Genet Syst  2007 82(3)   217-29  
Phylogenetic analysis of Oryza rufipogon strains and their relations to Oryza sativa strains by insertion polymorphism of rice SINEs.
[PubMed ID = 17660692] 
Nagano H, Onishi K, Ogasawara M, Horiuchi Y, Sano Y.
Genes Genet Syst  2005 80(5)   351-6  
Genealogy of the "Green Revolution" gene in rice.
[PubMed ID = 16394586] 
Takagi K, Nagano H, Kishima Y, Sano Y
Breed Sci.  2003 53   125-132  
MITE-transposon Display Efficiently Detects Polymorphisms among the Oryza AA-genome Species
Cheng C, Tsuchimoto S, Ohtsubo H, Ohtsubo E.
Genes Genet Syst  2002 77(5)   323-34  
Evolutionary relationships among rice species with AA genome based on SINE insertion analysis.
[PubMed ID = 12441643] 
H. Morishima, Y. Sano, H.I. Oka
1979
Observations on wild and cultivated rices and companion weeds in the hilly areas of Nepal, India and Thailand. Report of study-tour in Tropical Asia, 1979
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