Strains - Wild Strains - Wild Core Collection - Detail

Detail of Wild Core Collection

Basic information
Acc. No. W0002 , IRRI Acc. 100878
Core collection rank 1
Biological information
Species O. officinalis
Genome CC
Remarks Perennial
Search IRIS(IRRI) IRIS(IRRI)
IRGC100878 IRGC100175
Evaluation of bacterial blight resistance reaction
( Results List )
bacterial leaf blight T7174(Reaction) R
bacterial leaf blight T7133 (Reaction) MR
DNA Marker DNA Marker data
DRA Acc. No. DRA001178
Phenotype
Anther length(mm) 2.24
Apiculus color Green
Awn length(mm) 15
Grain weight of 20 0.14
Heading date 7/29-8/2
Panicle type 2
Pericarp color Red
Plant height 136
Presence or absence of awn Presence
Seed fertility 71.1
Shedding degree index 1.3
Spikelet No. 125.5
Stigma color Purple
Stem No. 24.8
Fiscal year 2000
Phenotype image
History
Original place Nonburi, Bangkok, Thailand
Acquired from H.I. Oka
Year acquired(*Year registered) * 1958/4/1
Preservation
Preservation form SELFING,VEGETATIVELY
Seed stock volume more than 1000
Year multiplied 1 1990
Year multiplied 2 2000
Reference    >> Please submit your publication.
Kitazumi A, Pabuayon I, Ohyanagi H, Fujita M, Osti M, Shenton M, Kakei Y, Nakamura Y, Brar D, Kurata N, de los Reyes G. Benildo.
Scientific Reports (SREP-18-15696)  2018 8  
Potential of Oryza officinalis to augment the cold tolerance genetic mechanisms of Oryza sativa by network complementation.
Shenton M, Iwamoto C, Kurata N, Ikeo K.
Rice (N Y)  2016 9(1)   42  
Effect of Wild and Cultivated Rice Genotypes on Rhizosphere Bacterial Community Composition.
[PubMed ID = 27557607
Yamaki S, Ohyanagi H, Yamasaki M, Eiguchi M, Miyabayashi T, Kubo T, Kurata N, Nonomura K.
Breed. Sci.  2013 63(3)   246-54  
Development of INDEL markers to discriminate all genome types rapidly in the genus Oryza.
[PubMed ID = 24273419
Nosaka M, Itoh J, Nagato Y, Ono A, Ishiwata A, Sato Y.
PLoS Genet.  2012 8(9)   e1002953  
Role of transposon-derived small RNAs in the interplay between genomes and parasitic DNA in rice.
[PubMed ID = 23028360
Ishikawa R, Ohnishi T, Kinoshita Y, Eiguchi M, Kurata N, Kinoshita T.
Plant J.  2011 65(5)   798-806  
Rice interspecies hybrids show precocious or delayed developmental transitions in the endosperm without change to the rate of syncytial nuclear division.
[PubMed ID = 21251103
Mizuta Y, Harushima Y, Kurata N.
Proc. Natl. Acad. Sci. U.S.A.  2010 107(47)   20417-22  
Rice pollen hybrid incompatibility caused by reciprocal gene loss of duplicated genes.
[PubMed ID = 21048083
Yamaki S, Miyabayashi T, Eiguchi M, Kitano H, Nonomura K.I., Kurata N.
Breed Sci.  2010 60(5)   586-596  
Diversity of panicle branching patterns in wild relatives of rice.
Wu J, Fujisawa M, Tian Z, Yamagata H, Kamiya K, Shibata M, Hosokawa S, Ito Y, Hamada M, Katagiri S, Kurita K, Yamamoto M, Kikuta A, Machita K, Karasawa W, Kanamori H, Namiki N, Mizuno H, Ma J, Sasaki T, Matsumoto T.
Plant J.  2009 60(5)   805-19  
Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure.
[PubMed ID = 19702669
Takahashi H, Sato YI, Nakamura I.
Breed Sci.  2008 58   225-233  
Evolutionary analysis of two plastid DNA sequences in cultivated and wild species of Oryza
Nishikawa T, Vaughan DA, Kadowaki K.
Theor. Appl. Genet.  2005 110(4)   696-705  
Phylogenetic analysis of Oryza species, based on simple sequence repeats and their flanking nucleotide sequences from the mitochondrial and chloroplast genomes.
[PubMed ID = 15650813
Xu JH, Osawa I, Tsuchimoto S, Ohtsubo E, Ohtsubo H.
Genes Genet. Syst.  2005 80(3)   161-71  
Two new SINE elements, p-SINE2 and p-SINE3, from rice.
[PubMed ID = 16172529
Takagi K, Nagano H, Kishima Y, Sano Y
Breed Sci.  2003 53   125-132  
MITE-transposon Display Efficiently Detects Polymorphisms among the Oryza AA-genome Species
H.I. Oka
1957
Report of study-tour to India for collection of rice, 1957
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