Strains - Wild Strains - Wild Core Collection - Detail

Detail of Wild Core Collection

Basic information
Acc. No. W0002 , IRRI Acc. 100878
Core collection rank 1
Biological information
Species O. officinalis
Genome CC
Remarks Perennial
IRIS(IRRI)
IRGC100878 IRGC100175
Evaluation of bacterial blight resistance reaction
( Results List ) 		bacterial leaf blight T7174(Reaction) R
bacterial leaf blight T7133 (Reaction) MR
DNA Marker DNA Marker data
DRA Acc. No. DRA001178
Phenotype
Anther length(mm) 2.24
Apiculus color Green
Awn length(mm) 15
Grain weight of 20 0.14
Heading date 7/29-8/2
Panicle type 2
Pericarp color Red
Plant height 136
Presence or absence of awn Presence
Seed fertility 71.1
Shedding degree index 1.3
Spikelet No. 125.5
Stigma color Purple
Stem No. 24.8
Fiscal year 2000
Phenotype image
History
Original place Nonburi, Bangkok, Thailand
Acquired from H.I. Oka
Year acquired(*Year registered) * 1958/4/1
Preservation
Preservation form SELFING,VEGETATIVELY
Seed stock volume more than 1000
Year multiplied 1 1990
Year multiplied 2 2000
Reference    >> Please submit your publication.
Priego-Cubero S, Liu Y, Toyomasu T, Gigl M, Hasegawa Y, Nojiri H, Dawid C, Okada K, Becker C.
New Phytol  2025 245(6)   2681-2697  
Evolution and diversification of the momilactone biosynthetic gene cluster in the genus Oryza.
[PubMed ID = 39887739] 
Yoshida Y, Nosaka-T M, Yoshikawa T, Sato Y.
Rice (N Y)  2022 15(1)   63  
Measurements of Antibacterial Activity of Seed Crude Extracts in Cultivated Rice and Wild Oryza Species.
[PubMed ID = 36513947] 
Shimizu M, Hirabuchi A, Sugihara Y, Abe A, Takeda T, Kobayashi M, Hiraka Y, Kanzaki E, Oikawa K, Saitoh H, Langner T, Banfield MJ, Kamoun S, Terauchi R.
Proc Natl Acad Sci U S A  2022 119(27)   e2116896119  
A genetically linked pair of NLR immune receptors shows contrasting patterns of evolution.
[PubMed ID = 35771942] 
Itoh A, Nakazato S, Wakabayashi H, Hamano A, Shenton MR, Miyamoto K, Mitsuhashi W, Okada K, Toyomasu T.
Biosci Biotechnol Biochem  2021 85(9)   1945-1952  
Functional kaurene-synthase-like diterpene synthases lacking a gamma domain are widely present in Oryza and related species.
[PubMed ID = 34244709] 
Kitazumi A, Pabuayon ICM, Ohyanagi H, Fujita M, Osti B, Shenton MR, Kakei Y, Nakamura Y, Brar DS, Kurata N, de Los Reyes BG.
Sci Rep  2018 8(1)   16346  
Potential of Oryza officinalis to augment the cold tolerance genetic mechanisms of Oryza sativa by network complementation.
[PubMed ID = 30397229] 
Shenton M, Iwamoto C, Kurata N, Ikeo K.
Rice (N Y)  2016 9(1)   42  
Effect of Wild and Cultivated Rice Genotypes on Rhizosphere Bacterial Community Composition.
[PubMed ID = 27557607] 
Yamaki S, Ohyanagi H, Yamasaki M, Eiguchi M, Miyabayashi T, Kubo T, Kurata N, Nonomura K.
Breed Sci  2013 63(3)   246-54  
Development of INDEL markers to discriminate all genome types rapidly in the genus Oryza.
[PubMed ID = 24273419] 
Nosaka M, Itoh J, Nagato Y, Ono A, Ishiwata A, Sato Y.
PLoS Genet  2012 8(9)   e1002953  
Role of transposon-derived small RNAs in the interplay between genomes and parasitic DNA in rice.
[PubMed ID = 23028360] 
Honma Y, Yoshida Y, Terachi T, Toriyama K, Mikami T, Kubo T.
Curr Genet  2011 57(4)   261-70  
Polymorphic minisatellites in the mitochondrial DNAs of Oryza and Brassica.
[PubMed ID = 21562713] 
Ishikawa R, Ohnishi T, Kinoshita Y, Eiguchi M, Kurata N, Kinoshita T.
Plant J  2011 65(5)   798-806  
Rice interspecies hybrids show precocious or delayed developmental transitions in the endosperm without change to the rate of syncytial nuclear division.
[PubMed ID = 21251103] 
Mizuta Y, Harushima Y, Kurata N.
Proc Natl Acad Sci U S A  2010 107(47)   20417-22  
Rice pollen hybrid incompatibility caused by reciprocal gene loss of duplicated genes.
[PubMed ID = 21048083] 
Yamaki S, Miyabayashi T, Eiguchi M, Kitano H, Nonomura K.I., Kurata N.
Breed Sci.  2010 60(5)   586-596  
Diversity of panicle branching patterns in wild relatives of rice.
Wu J, Fujisawa M, Tian Z, Yamagata H, Kamiya K, Shibata M, Hosokawa S, Ito Y, Hamada M, Katagiri S, Kurita K, Yamamoto M, Kikuta A, Machita K, Karasawa W, Kanamori H, Namiki N, Mizuno H, Ma J, Sasaki T, Matsumoto T.
Plant J  2009 60(5)   805-19  
Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure.
[PubMed ID = 19702669] 
Takahashi H, Sato YI, Nakamura I.
Breed Sci.  2008 58   225-233  
Evolutionary analysis of two plastid DNA sequences in cultivated and wild species of Oryza
Xu JH, Osawa I, Tsuchimoto S, Ohtsubo E, Ohtsubo H.
Genes Genet Syst  2005 80(3)   161-71  
Two new SINE elements, p-SINE2 and p-SINE3, from rice.
[PubMed ID = 16172529] 
Nishikawa T, Vaughan DA, Kadowaki K.
Theor Appl Genet  2005 110(4)   696-705  
Phylogenetic analysis of Oryza species, based on simple sequence repeats and their flanking nucleotide sequences from the mitochondrial and chloroplast genomes.
[PubMed ID = 15650813] 
Takagi K, Nagano H, Kishima Y, Sano Y
Breed Sci.  2003 53   125-132  
MITE-transposon Display Efficiently Detects Polymorphisms among the Oryza AA-genome Species
H.I. Oka
1957
Report of study-tour to India for collection of rice, 1957
Request

Users except Japan can not request any "plant body" resources.
Users can not request more than 20 strains provided by the National Institute of Genetics (Genetic Resource Center)within the year. Please contact us if you wish to request more than (Contact: hfuruumi [at] nig.ac.jp).

Please contact us if you wish to request for other form of strains: other than seed, plant body and DNA.
Seed
Plant Body
DNA
/rice/oryzabase