Strains - Wild Strains - Wild Core Collection - Detail

Detail of Wild Core Collection

Basic information
Acc. No. W1943
Core collection rank -
Biological information
Species O. rufipogon
Old Species Name O. perennis
Genome AA
Evaluation of bacterial blight resistance reaction
( Results List )
bacterial leaf blight T7174(Reaction)
bacterial leaf blight T7133 (Reaction)
DNA Marker -
DRA Acc. No. -
History
Year acquired(*Year registered) * 1984/12
Preservation
Preservation form SELFING,VEGETATIVELY
Seed stock volume 100 to 1000
Year multiplied 1 1987
Year multiplied 2 1988
Reference    >> Please submit your publication.
Stein JC, Yu Y, Copetti D, Zwickl DJ, Zhang L, Zhang C, Chougule K, Gao D, Iwata A, Goicoechea JL, Wei S, Wang J, Liao Y, Wang M, Jacquemin J, Becker C, Kudrna D, Zhang J, Londono CEM, Song X, Lee S, Sanchez P, Zuccolo A, Ammiraju JSS, Talag J, Danowitz A, Rivera LF, Gschwend AR, Noutsos C, Wu CC, Kao SM, Zeng JW, Wei FJ, Zhao Q, Feng Q, El Baidouri M, Carpentier MC, Lasserre E, Cooke R, Rosa Farias DD, da Maia LC, Dos Santos RS, Nyberg KG, McNally KL, Mauleon R, Alexandrov N, Schmutz J, Flowers D, Fan C, Weigel D, Jena KK, Wicker T, Chen M, Han B, Henry R, Hsing YC, Kurata N, de Oliveira AC, Panaud O, Jackson SA, Machado CA, Sanderson MJ, Long M, Ware D, Wing RA.
Nat Genet  2018 50(2)   285-296  
Genomes of 13 domesticated and wild rice relatives highlight genetic conservation, turnover and innovation across the genus Oryza.
[PubMed ID = 29358651
Zhao Q, Feng Q, Lu H, Li Y, Wang A, Tian Q, Zhan Q, Lu Y, Zhang L, Huang T, Wang Y, Fan D, Zhao Y, Wang Z, Zhou C, Chen J, Zhu C, Li W, Weng Q, Xu Q, Wang ZX, Wei X, Han B, Huang X.
Nature Genetics  2018 50   278-284  
Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice
Toyomasu T, Miyamoto K, Shenton MR, Sakai A, Sugawara C, Horie K, Kawaide H, Hasegawa M, Chuba M, Mitsuhashi W, Yamane H, Kurata N, Okada K.
Biochem Biophys Res Commun  2016 480(3)   402-408  
Characterization and evolutionary analysis of ent-kaurene synthase like genes from the wild rice species Oryza rufipogon.
[PubMed ID = 27771250
Kim H, Jung J, Singh N, Greenberg A, Doyle JJ, Tyagi W, Chung JW, Kimball J, Hamilton RS, McCouch SR.
Rice (N Y)  2016 9(1)   56  
Population Dynamics Among six Major Groups of the Oryza rufipogon Species Complex, Wild Relative of Cultivated Asian Rice.
[PubMed ID = 27730519
Miyamoto K, Fujita M, Shenton MR, Akashi S, Sugawara C, Sakai A, Horie K, Hasegawa M, Kawaide H, Mitsuhashi W, Nojiri H, Yamane H, Kurata N, Okada K, Toyomasu T.
Plant J  2016 87(3)   293-304  
Evolutionary trajectory of phytoalexin biosynthetic gene clusters in rice.
[PubMed ID = 27133567
Shenton MR, Ohyanagi H, Wang ZX, Toyoda A, Fujiyama A, Nagata T, Feng Q, Han B, Kurata N.
Mol Genet Genomics  2015 290(5)   1753-70  
Rapid turnover of antimicrobial-type cysteine-rich protein genes in closely related Oryza genomes.
[PubMed ID = 25842177
Ogiso-Tanaka E, Matsubara K, Yamamoto S, Nonoue Y, Wu J, Fujisawa H, Ishikubo H, Tanaka T, Ando T, Matsumoto T, Yano M.
PLoS One  2013 8(10)   e75959  
Natural variation of the RICE FLOWERING LOCUS T 1 contributes to flowering time divergence in rice.
[PubMed ID = 24098411
Yang CC, Kawahara Y, Mizuno H, Wu J, Matsumoto T, Itoh T.
Mol Biol Evol  2012 29(5)   1471-9  
Independent domestication of Asian rice followed by gene flow from japonica to indica.
[PubMed ID = 22319137
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B.
Nature  2012 490(7421)   497-501  
A map of rice genome variation reveals the origin of cultivated rice.
[PubMed ID = 23034647
Asano K, Yamasaki M, Takuno S, Miura K, Katagiri S, Ito T, Doi K, Wu J, Ebana K, Matsumoto T, Innan H, Kitano H, Ashikari M, Matsuoka M.
Proc Natl Acad Sci U S A  2011 108(27)   11034-9  
Artificial selection for a green revolution gene during japonica rice domestication.
[PubMed ID = 21646530
Wu J, Fujisawa M, Tian Z, Yamagata H, Kamiya K, Shibata M, Hosokawa S, Ito Y, Hamada M, Katagiri S, Kurita K, Yamamoto M, Kikuta A, Machita K, Karasawa W, Kanamori H, Namiki N, Mizuno H, Ma J, Sasaki T, Matsumoto T.
Plant J  2009 60(5)   805-19  
Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure.
[PubMed ID = 19702669
Yamane H, Ito T, Ishikubo H, Fujisawa M, Yamagata H, Kamiya K, Ito Y, Hamada M, Kanamori H, Ikawa H, Katayose Y, Wu J, Sasaki T, Matsumoto T.
RICE  2008
Molecular and Evolutionary Analysis of the Hd6 Photoperiod Sensitivity Gene Within Genus Oryza.
Wu J, Mizuno H, Sasaki T, Matsumoto T.
RICE  2008 1   119-126  
Comparative Analysis of Rice Genome Sequence to Understand the Molecular Basis of Genome Evolution.
Xu JH, Cheng C, Tsuchimoto S, Ohtsubo H, Ohtsubo E.
Genes Genet Syst  2007 82(3)   217-29  
Phylogenetic analysis of Oryza rufipogon strains and their relations to Oryza sativa strains by insertion polymorphism of rice SINEs.
[PubMed ID = 17660692
Nagano H, Onishi K, Ogasawara M, Horiuchi Y, Sano Y.
Genes Genet Syst  2005 80(5)   351-6  
Genealogy of the "Green Revolution" gene in rice.
[PubMed ID = 16394586
Xu JH, Osawa I, Tsuchimoto S, Ohtsubo E, Ohtsubo H.
Genes Genet Syst  2005 80(3)   161-71  
Two new SINE elements, p-SINE2 and p-SINE3, from rice.
[PubMed ID = 16172529
Saitoh K, Onishi K, Mikami I, Thidar K, Sano Y.
Genetics  2004 168(2)   997-1007  
Allelic diversification at the C (OsC1) locus of wild and cultivated rice: nucleotide changes associated with phenotypes.
[PubMed ID = 15514070
Cheng C, Tsuchimoto S, Ohtsubo H, Ohtsubo E.
Genes Genet Syst  2002 77(5)   323-34  
Evolutionary relationships among rice species with AA genome based on SINE insertion analysis.
[PubMed ID = 12441643
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