Strains - Wild Strains - Wild Core Collection - Detail

Detail of Wild Core Collection

Basic information
Acc. No. W0610
Core collection rank 3
Biological information
Species O. rufipogon
Old Species Name O. sativa v. fatua
Genome AA
SINE code AA110000
Remarks Perennial
Local name : Daik saba
Evaluation of bacterial blight resistance reaction
( Results List )
bacterial leaf blight T7174(Reaction) HR
bacterial leaf blight T7133 (Reaction) S
DNA Marker DNA Marker data
DRA Acc. No. -
Phenotype
Fiscal year 2000
History
Original place Rangoon, Burma
Acquired from 1) K. Yamashita
2) I. Hirayoshi
Year acquired(*Year registered) * 1959/7/23
Preservation
Preservation form SELFING
Seed stock volume more than 1000
Year multiplied 1 1987
Year multiplied 2 1997
Reference    >> Please submit your publication.
Kubo T, Takashi T, Ashikari M, Yoshimura A, Kurata N.
Mol Plant  2016 9(2)   221-232  
Two Tightly Linked Genes at the hsa1 Locus Cause Both F1 and F2 Hybrid Sterility in Rice.
[PubMed ID = 26455463
Yin H, Akimoto M, Kaewcheenchai R, Sotowa M, Ishii T, Ishikawa R.
Genes Genet. Syst.  2015 90(5)   269-81  
Inconsistent diversities between nuclear and plastid genomes of AA genome species in the genus Oryza.
[PubMed ID = 26687860
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B.
Nature  2012 490(7421)   497-501  
A map of rice genome variation reveals the origin of cultivated rice.
[PubMed ID = 23034647
Asano K, Yamasaki M, Takuno S, Miura K, Katagiri S, Ito T, Doi K, Wu J, Ebana K, Matsumoto T, Innan H, Kitano H, Ashikari M, Matsuoka M.
Proc. Natl. Acad. Sci. U.S.A.  2011 108(27)   11034-9  
Artificial selection for a green revolution gene during japonica rice domestication.
[PubMed ID = 21646530
Sugimoto K, Takeuchi Y, Ebana K, Miyao A, Hirochika H, Hara N, Ishiyama K, Kobayashi M, Ban Y, Hattori T, Yano M.
Proc. Natl. Acad. Sci. U.S.A.  2010 107(13)   5792-7  
Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice.
[PubMed ID = 20220098
Mizuta Y, Harushima Y, Kurata N.
Proc. Natl. Acad. Sci. U.S.A.  2010 107(47)   20417-22  
Rice pollen hybrid incompatibility caused by reciprocal gene loss of duplicated genes.
[PubMed ID = 21048083
Yamaki S, Miyabayashi T, Eiguchi M, Kitano H, Nonomura K.I., Kurata N.
Breed Sci.  2010 60(5)   586-596  
Diversity of panicle branching patterns in wild relatives of rice.
Wu J, Fujisawa M, Tian Z, Yamagata H, Kamiya K, Shibata M, Hosokawa S, Ito Y, Hamada M, Katagiri S, Kurita K, Yamamoto M, Kikuta A, Machita K, Karasawa W, Kanamori H, Namiki N, Mizuno H, Ma J, Sasaki T, Matsumoto T.
Plant J.  2009 60(5)   805-19  
Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure.
[PubMed ID = 19702669
Xu JH, Cheng C, Tsuchimoto S, Ohtsubo H, Ohtsubo E.
Genes Genet. Syst.  2007 82(3)   217-29  
Phylogenetic analysis of Oryza rufipogon strains and their relations to Oryza sativa strains by insertion polymorphism of rice SINEs.
[PubMed ID = 17660692
Xu JH, Osawa I, Tsuchimoto S, Ohtsubo E, Ohtsubo H.
Genes Genet. Syst.  2005 80(3)   161-71  
Two new SINE elements, p-SINE2 and p-SINE3, from rice.
[PubMed ID = 16172529
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