Strains - Wild Strains - Wild Core Collection - Detail

Detail of Wild Core Collection

Basic information
Acc. No. W0593
Core collection rank 3
Biological information
Species O. rufipogon
Old Species Name O. sativa fatua, O. perennis
Genome AA
SINE code AA110000
Remarks Perennial
Evaluation of bacterial blight resistance reaction
( Results List )
bacterial leaf blight T7174(Reaction) S
bacterial leaf blight T7133 (Reaction) S
DNA Marker DNA Marker data
DRA Acc. No. -
Phenotype
Anther length(mm) 3.24
Apiculus color Purple
Awn length(mm) 135.7
Grain weight of 20 0.53
Heading date 2001.7.30-8.2
Hull color Black-White
Panicle length 23.1
Panicle type 4.7
Pericarp color White
Plant height 142
Presence or absence of awn Presence
Seed fertility 84.6
Shedding degree index 1
Stigma color Purple
Stem No. 38.7
Fiscal year 2001
Phenotype image
History
Original place Binjai Rendah, Malaya (Malaysia)
Acquired from I. Hirayoshi
Year acquired(*Year registered) * 1959/4/20
Preservation
Preservation form SELFING
Seed stock volume more than 1000
Year multiplied 1 1998
Year multiplied 2 2000
Reference    >> Please submit your publication.
Kubo T, Takashi T, Ashikari M, Yoshimura A, Kurata N.
Mol Plant  2016 9(2)   221-232  
Two Tightly Linked Genes at the hsa1 Locus Cause Both F1 and F2 Hybrid Sterility in Rice.
[PubMed ID = 26455463
Kobayashi H.
The Bulletin of Okayama University of Science  2015 51A   53-56  
A study of the relationship between wild rice (Oryza rufipogon) and japonica rice varieties (Oryza sativa L.)
Yin H, Akimoto M, Kaewcheenchai R, Sotowa M, Ishii T, Ishikawa R.
Genes Genet. Syst.  2015 90(5)   269-81  
Inconsistent diversities between nuclear and plastid genomes of AA genome species in the genus Oryza.
[PubMed ID = 26687860
Ogiso-Tanaka E, Matsubara K, Yamamoto S, Nonoue Y, Wu J, Fujisawa H, Ishikubo H, Tanaka T, Ando T, Matsumoto T, Yano M.
PLoS ONE  2013 8(10)   e75959  
Natural variation of the RICE FLOWERING LOCUS T 1 contributes to flowering time divergence in rice.
[PubMed ID = 24098411
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B.
Nature  2012 490(7421)   497-501  
A map of rice genome variation reveals the origin of cultivated rice.
[PubMed ID = 23034647
Asano K, Yamasaki M, Takuno S, Miura K, Katagiri S, Ito T, Doi K, Wu J, Ebana K, Matsumoto T, Innan H, Kitano H, Ashikari M, Matsuoka M.
Proc. Natl. Acad. Sci. U.S.A.  2011 108(27)   11034-9  
Artificial selection for a green revolution gene during japonica rice domestication.
[PubMed ID = 21646530
Yamaki S, Miyabayashi T, Eiguchi M, Kitano H, Nonomura K.I., Kurata N.
Breed Sci.  2010 60(5)   586-596  
Diversity of panicle branching patterns in wild relatives of rice.
Wu J, Fujisawa M, Tian Z, Yamagata H, Kamiya K, Shibata M, Hosokawa S, Ito Y, Hamada M, Katagiri S, Kurita K, Yamamoto M, Kikuta A, Machita K, Karasawa W, Kanamori H, Namiki N, Mizuno H, Ma J, Sasaki T, Matsumoto T.
Plant J.  2009 60(5)   805-19  
Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure.
[PubMed ID = 19702669
Takahashi H, Sato YI, Nakamura I.
Breed Sci.  2008 58   225-233  
Evolutionary analysis of two plastid DNA sequences in cultivated and wild species of Oryza
Xu JH, Cheng C, Tsuchimoto S, Ohtsubo H, Ohtsubo E.
Genes Genet. Syst.  2007 82(3)   217-29  
Phylogenetic analysis of Oryza rufipogon strains and their relations to Oryza sativa strains by insertion polymorphism of rice SINEs.
[PubMed ID = 17660692
Takata M, Kishima Y, Sano Y.
Breed Sci.  2005 55   57-63  
DNA Methylation Polymorphisms in Rice and Wild Rice Strains: Detection of Epigenetic Markers
Miyashita NT, Yoshida K, Ishii T.
Genes Genet. Syst.  2005 80(3)   173-83  
DNA variation in the metallothionein genes in wild rice Oryza rufipogon: relationship between DNA sequence polymorphism, codon bias and gene expression.
[PubMed ID = 16172530
Nagano H, Onishi K, Ogasawara M, Horiuchi Y, Sano Y.
Genes Genet. Syst.  2005 80(5)   351-6  
Genealogy of the "Green Revolution" gene in rice.
[PubMed ID = 16394586
Xu JH, Osawa I, Tsuchimoto S, Ohtsubo E, Ohtsubo H.
Genes Genet. Syst.  2005 80(3)   161-71  
Two new SINE elements, p-SINE2 and p-SINE3, from rice.
[PubMed ID = 16172529
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