Strains - Wild Strains - Wild Core Collection - Detail

Detail of Wild Core Collection

Basic information
Acc. No. W0107
Core collection rank 3
Biological information
Species O. rufipogon
Old Species Name O. sativa spontanea
Genome AA
SINE code AA110000
Remarks Annual
Harvested by a local woman
Search IRIS(IRRI) IRIS(IRRI)
IRGC100207 IRGC100898
Evaluation of bacterial blight resistance reaction
( Results List )
bacterial leaf blight T7174(Reaction) R or MR
bacterial leaf blight T7133 (Reaction) M or MR
DNA Marker DNA Marker data
DRA Acc. No. -
Phenotype
Anther length(mm) 2.41
Apiculus color Purple
Awn length(mm) 103.5
Grain weight of 20 0.48
Heading date 2001/7/26
Hull color Black
Panicle length 17.6
Panicle type 4
Pericarp color Red
Plant height 82.3
Presence or absence of awn Presence
Seed fertility 94.5
Shedding degree index 1
Stigma color Purple
Stem No. 49.7
Fiscal year 2001
Phenotype image
History
Original place Pahala, Orissa, India
Acquired from H.I. Oka
Year acquired(*Year registered) * 1958/4/1
Preservation
Preservation form SELFING
Seed stock volume more than 1000
Year multiplied 1 1998
Year multiplied 2 2000
Reference    >> Please submit your publication.
Yin H, Akimoto M, Kaewcheenchai R, Sotowa M, Ishii T, Ishikawa R.
Genes Genet. Syst.  2015 90(5)   269-81  
Inconsistent diversities between nuclear and plastid genomes of AA genome species in the genus Oryza.
[PubMed ID = 26687860
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B.
Nature  2012 490(7421)   497-501  
A map of rice genome variation reveals the origin of cultivated rice.
[PubMed ID = 23034647
Asano K, Yamasaki M, Takuno S, Miura K, Katagiri S, Ito T, Doi K, Wu J, Ebana K, Matsumoto T, Innan H, Kitano H, Ashikari M, Matsuoka M.
Proc. Natl. Acad. Sci. U.S.A.  2011 108(27)   11034-9  
Artificial selection for a green revolution gene during japonica rice domestication.
[PubMed ID = 21646530
Wu J, Fujisawa M, Tian Z, Yamagata H, Kamiya K, Shibata M, Hosokawa S, Ito Y, Hamada M, Katagiri S, Kurita K, Yamamoto M, Kikuta A, Machita K, Karasawa W, Kanamori H, Namiki N, Mizuno H, Ma J, Sasaki T, Matsumoto T.
Plant J.  2009 60(5)   805-19  
Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure.
[PubMed ID = 19702669
Chung MC, Lee YI, Cheng YY, Chou YJ, Lu CF.
Theor. Appl. Genet.  2008 116(6)   745-53  
Chromosomal polymorphism of ribosomal genes in the genus Oryza.
[PubMed ID = 18214422
Teranishi C, Yoshida K, Miyashita NT.
Genes Genet. Syst.  2008 83(5)   403-15  
DNA polymorphism in the SUPERWOMAN1 (SPW1) locus of the wild rice Oryza rufipogon and its related species.
[PubMed ID = 19168991
Takata M, Kishima Y, Sano Y.
Breed Sci.  2005 55   57-63  
DNA Methylation Polymorphisms in Rice and Wild Rice Strains: Detection of Epigenetic Markers
Kobayashi S, Noro Y, Nagano H, Yoshida KT, Takano-Shimizu T, Kishima Y, Sano Y.
Gene  2005 346   231-40  
Evidence for an evolutionary force that prevents epigenetic silencing between tail-to-tail rice genes with a short spacer.
[PubMed ID = 15716045
Nagano H, Onishi K, Ogasawara M, Horiuchi Y, Sano Y.
Genes Genet. Syst.  2005 80(5)   351-6  
Genealogy of the "Green Revolution" gene in rice.
[PubMed ID = 16394586
Xu JH, Osawa I, Tsuchimoto S, Ohtsubo E, Ohtsubo H.
Genes Genet. Syst.  2005 80(3)   161-71  
Two new SINE elements, p-SINE2 and p-SINE3, from rice.
[PubMed ID = 16172529
Takagi K, Nagano H, Kishima Y, Sano Y
Breed Sci.  2003 53   125-132  
MITE-transposon Display Efficiently Detects Polymorphisms among the Oryza AA-genome Species
Cheng C, Tsuchimoto S, Ohtsubo H, Ohtsubo E.
Genes Genet. Syst.  2002 77(5)   323-34  
Evolutionary relationships among rice species with AA genome based on SINE insertion analysis.
[PubMed ID = 12441643
H.I. Oka
1957
Report of study-tour to India for collection of rice, 1957
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