Strains - Wild Strains - Wild Core Collection - Detail

Detail of Wild Core Collection

Basic information
Acc. No. W0652
Core collection rank 1
Biological information
Species O. barthii
Old Species Name O. stapfii (?)
Genome AA
SINE code AA101000
Remarks Annual
Evaluation of bacterial blight resistance reaction
( Results List )
bacterial leaf blight T7174(Reaction) S
bacterial leaf blight T7133 (Reaction) S
DNA Marker DNA Marker data
DRA Acc. No. DRA004588
Phenotype
Anther length(mm) 2.35
Apiculus color Purple
Awn length(mm) 76.5
Grain weight of 20 0.5
Heading date 7/25-8/4
Hull color Black
Panicle type 4
Pericarp color Red
Plant height 62.3
Presence or absence of awn Presence
Seed fertility 58.9
Shedding degree index 1.3
Spikelet No. 28.4
Stigma color Purple
Stem No. 51.3
Fiscal year 2000
Phenotype image
History
Original place Kambia, Sierra Leone
Acquired from K. Furusato
Year acquired(*Year registered) * 1960/1/13
Preservation
Preservation form SELFING
Seed stock volume 100 to 1000
Year multiplied 1 1997
Year multiplied 2 2000
Reference    >> Please submit your publication.
Wu Y, Zhao S, Li X, Zhang B, Jiang L, Tang Y, Zhao J, Ma X, Cai H, Sun C, Tan L.
Nat Commun  2018 9(1)   4157  
Deletions linked to PROG1 gene participate in plant architecture domestication in Asian and African rice.
[PubMed ID = 30297755
Kubo T, Takashi T, Ashikari M, Yoshimura A, Kurata N.
Mol Plant  2016 9(2)   221-232  
Two Tightly Linked Genes at the hsa1 Locus Cause Both F1 and F2 Hybrid Sterility in Rice.
[PubMed ID = 26455463
Yin H, Akimoto M, Kaewcheenchai R, Sotowa M, Ishii T, Ishikawa R.
Genes Genet. Syst.  2015 90(5)   269-81  
Inconsistent diversities between nuclear and plastid genomes of AA genome species in the genus Oryza.
[PubMed ID = 26687860
Yamaki S, Ohyanagi H, Yamasaki M, Eiguchi M, Miyabayashi T, Kubo T, Kurata N, Nonomura K.
Breed. Sci.  2013 63(3)   246-54  
Development of INDEL markers to discriminate all genome types rapidly in the genus Oryza.
[PubMed ID = 24273419
Ishikawa R, Ohnishi T, Kinoshita Y, Eiguchi M, Kurata N, Kinoshita T.
Plant J.  2011 65(5)   798-806  
Rice interspecies hybrids show precocious or delayed developmental transitions in the endosperm without change to the rate of syncytial nuclear division.
[PubMed ID = 21251103
Fujino K, Wu J, Sekiguchi H, Ito T, Izawa T, Matsumoto T.
Mol. Genet. Genomics  2010 284(2)   137-46  
Multiple introgression events surrounding the Hd1 flowering-time gene in cultivated rice, Oryza sativa L.
[PubMed ID = 20607290
Kumagai M, Wang L, Ueda S.
Gene  2010 462(1-2)   44-51  
Genetic diversity and evolutionary relationships in genus Oryza revealed by using highly variable regions of chloroplast DNA.
[PubMed ID = 20450965
Karki S, Tsukiyama T, Okumoto Y, Rizal G, Naito K, Teraishi M, Nakazaki T, Tanisaka T.
Breed Sci.  2009 59   297-307  
Analysis of distribution and proliferation of mPing family transposons in a wild rice (Oryza rufipogon Griff.).
Suzaki T, Ohneda M, Toriba T, Yoshida A, Hirano HY.
PLoS Genet.  2009 5(10)   e1000693  
FON2 SPARE1 redundantly regulates floral meristem maintenance with FLORAL ORGAN NUMBER2 in rice.
[PubMed ID = 19834537
Wu J, Fujisawa M, Tian Z, Yamagata H, Kamiya K, Shibata M, Hosokawa S, Ito Y, Hamada M, Katagiri S, Kurita K, Yamamoto M, Kikuta A, Machita K, Karasawa W, Kanamori H, Namiki N, Mizuno H, Ma J, Sasaki T, Matsumoto T.
Plant J.  2009 60(5)   805-19  
Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure.
[PubMed ID = 19702669
Nishikawa T, Vaughan DA, Kadowaki K.
Theor. Appl. Genet.  2005 110(4)   696-705  
Phylogenetic analysis of Oryza species, based on simple sequence repeats and their flanking nucleotide sequences from the mitochondrial and chloroplast genomes.
[PubMed ID = 15650813
Tsuchiya T, Nakamura I
Breed Sci.  2004 54   67-73  
Disruption of GSTZ1 Gene by Large Genetic Alteration in Oryza glaberrima
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