Strains - Wild Strains - Wild Core Collection - Detail

Detail of Wild Core Collection

Basic information
Acc. No. W2078 , OR10
Core collection rank 2
Biological information
Species O. rufipogon
Old Species Name O. rufipogon
Genome AA
SINE code AA110000
Remarks Strains characterized by p-SINE1 insertion polymorphism (Xu et al. Identification and characterization of Australian wild rice strains of Oryza meridionalis and Oryza rufipogon by SINE insertion polymorphism. GGS)
Search IRIS(IRRI) IRIS(IRRI)
IRGC105283
Evaluation of bacterial blight resistance reaction
( Results List )
bacterial leaf blight T7174(Reaction) -
bacterial leaf blight T7133 (Reaction)
DNA Marker DNA Marker data
DRA Acc. No. DRA005599
Phenotype
Anther length(mm) 5.84
Apiculus color Purple
Awn length(mm) 74.6
Grain weight of 20 0.3
Heading date 2001.8.1-8.2
Hull color Black-White
Panicle length 19.1
Panicle type 4
Pericarp color Red
Plant height 130
Presence or absence of awn Presence
Seed fertility 23.1
Shedding degree index 1
Stigma color Purple
Stem No. 29.8
Fiscal year 2001
Phenotype image
History
Original place from Darwin to Normanton, Australia
Acquired from G. Second (ORSTOM)
Year acquired(*Year registered) * 1993/12/13
Preservation
Preservation form SELFING,VEGETATIVELY
Seed stock volume 100 to 1000
Year multiplied 1 1996
Year multiplied 2 1997
Reference    >> Please submit your publication.
Kubo T, Takashi T, Ashikari M, Yoshimura A, Kurata N.
Mol Plant  2016 9(2)   221-232  
Two Tightly Linked Genes at the hsa1 Locus Cause Both F1 and F2 Hybrid Sterility in Rice.
[PubMed ID = 26455463
Yin H, Akimoto M, Kaewcheenchai R, Sotowa M, Ishii T, Ishikawa R.
Genes Genet Syst  2015 90(5)   269-81  
Inconsistent diversities between nuclear and plastid genomes of AA genome species in the genus Oryza.
[PubMed ID = 26687860
Ishimaru K, Hirotsu N, Madoka Y, Murakami N, Hara N, Onodera H, Kashiwagi T, Ujiie K, Shimizu B, Onishi A, Miyagawa H, Katoh E.
Nat Genet  2013 45(6)   707-11  
Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield.
[PubMed ID = 23583977
Yamaki S, Ohyanagi H, Yamasaki M, Eiguchi M, Miyabayashi T, Kubo T, Kurata N, Nonomura K.
Breed Sci  2013 63(3)   246-54  
Development of INDEL markers to discriminate all genome types rapidly in the genus Oryza.
[PubMed ID = 24273419
Huang X, Kurata N, Wei X, Wang ZX, Wang A, Zhao Q, Zhao Y, Liu K, Lu H, Li W, Guo Y, Lu Y, Zhou C, Fan D, Weng Q, Zhu C, Huang T, Zhang L, Wang Y, Feng L, Furuumi H, Kubo T, Miyabayashi T, Yuan X, Xu Q, Dong G, Zhan Q, Li C, Fujiyama A, Toyoda A, Lu T, Feng Q, Qian Q, Li J, Han B.
Nature  2012 490(7421)   497-501  
A map of rice genome variation reveals the origin of cultivated rice.
[PubMed ID = 23034647
Yamaki S, Miyabayashi T, Eiguchi M, Kitano H, Nonomura K.I., Kurata N.
Breed Sci.  2010 60(5)   586-596  
Diversity of panicle branching patterns in wild relatives of rice.
Suzaki T, Ohneda M, Toriba T, Yoshida A, Hirano HY.
PLoS Genet  2009 5(10)   e1000693  
FON2 SPARE1 redundantly regulates floral meristem maintenance with FLORAL ORGAN NUMBER2 in rice.
[PubMed ID = 19834537
Huang CL, Hwang SY, Chiang YC, Lin TP.
Genetics  2008 179(3)   1527-38  
Molecular evolution of the Pi-ta gene resistant to rice blast in wild rice (Oryza rufipogon).
[PubMed ID = 18622033
Xu JH, Kurata N, Akimoto M, Ohtsubo H, Ohtsubo E.
Genes Genet Syst  2005 80(2)   129-34  
Identification and characterization of Australian wild rice strains of Oryza meridionalis and Oryza rufipogon by SINE insertion polymorphism.
[PubMed ID = 16172525
Nishikawa T, Vaughan DA, Kadowaki K.
Theor Appl Genet  2005 110(4)   696-705  
Phylogenetic analysis of Oryza species, based on simple sequence repeats and their flanking nucleotide sequences from the mitochondrial and chloroplast genomes.
[PubMed ID = 15650813
G. Second
1987
Field notes on a collection of wild rice species in Australia, May 1987.
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