Strains - Wild Strains - Wild Core Collection - Detail

Detail of Wild Core Collection

Basic information
Acc. No. W2069 , OR1
Core collection rank 2
Biological information
Species O. meridionalis
Old Species Name O. rufipogon
Genome AA
SINE code AA100010
Remarks Strains characterized by p-SINE1 insertion polymorphism (Xu et al. Identification and characterization of Australian wild rice strains of Oryza meridionalis and Oryza rufipogon by SINE insertion polymorphism. GGS)
Search IRIS(IRRI) IRIS(IRRI)
IRGC105279
Evaluation of bacterial blight resistance reaction
( Results List )
bacterial leaf blight T7174(Reaction) S
bacterial leaf blight T7133 (Reaction) S
DNA Marker DNA Marker data
DRA Acc. No. DRA004590
Phenotype
Fiscal year 2000
Phenotype image
History
Original place 15.51 N, 128.44 E, Kununurra area, Australia
Acquired from G. Second (ORSTOM)
Year acquired(*Year registered) * 1993/12/13
Preservation
Preservation form SELFING
Seed stock volume more than 1000
Year multiplied 2 1995
Reference    >> Please submit your publication.
Yin H, Akimoto M, Kaewcheenchai R, Sotowa M, Ishii T, Ishikawa R.
Genes Genet. Syst.  2015 90(5)   269-81  
Inconsistent diversities between nuclear and plastid genomes of AA genome species in the genus Oryza.
[PubMed ID = 26687860
Yamaki S, Ohyanagi H, Yamasaki M, Eiguchi M, Miyabayashi T, Kubo T, Kurata N, Nonomura K.
Breed. Sci.  2013 63(3)   246-54  
Development of INDEL markers to discriminate all genome types rapidly in the genus Oryza.
[PubMed ID = 24273419
Wu J, Fujisawa M, Tian Z, Yamagata H, Kamiya K, Shibata M, Hosokawa S, Ito Y, Hamada M, Katagiri S, Kurita K, Yamamoto M, Kikuta A, Machita K, Karasawa W, Kanamori H, Namiki N, Mizuno H, Ma J, Sasaki T, Matsumoto T.
Plant J.  2009 60(5)   805-19  
Comparative analysis of complete orthologous centromeres from two subspecies of rice reveals rapid variation of centromere organization and structure.
[PubMed ID = 19702669
Xu JH, Kurata N, Akimoto M, Ohtsubo H, Ohtsubo E.
Genes Genet. Syst.  2005 80(2)   129-34  
Identification and characterization of Australian wild rice strains of Oryza meridionalis and Oryza rufipogon by SINE insertion polymorphism.
[PubMed ID = 16172525
Xu JH, Osawa I, Tsuchimoto S, Ohtsubo E, Ohtsubo H.
Genes Genet. Syst.  2005 80(3)   161-71  
Two new SINE elements, p-SINE2 and p-SINE3, from rice.
[PubMed ID = 16172529
Cheng C, Tsuchimoto S, Ohtsubo H, Ohtsubo E.
Genes Genet. Syst.  2002 77(5)   323-34  
Evolutionary relationships among rice species with AA genome based on SINE insertion analysis.
[PubMed ID = 12441643
G. Second
1987
Field notes on a collection of wild rice species in Australia, May 1987.
Request
Users except Japan can not request any plant body resources.
Please contact us if you wish to request for other form of strains: other than seed, plant body and DNA.
Seed
Plant Body Not available
DNA
/rice/oryzabase