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| Ref Id | Author | Title | Journal | Volume | Pages | Year | PubMed ID | CGSNL Gene Symbol |
|---|---|---|---|---|---|---|---|---|
| 21975 | Xu,Y., Zhu,Q., Panbangred,W., Shirasu,K. and Lamb,C. | Regulation, expression and function of a new basic chitinase gene in rice (Oryza sativa L.). | Plant Mol. Biol. | 30(3) | 387-401 | 1996 | 8605293 | CHT1 |
| 22216 | Nishizawa,Y. and Hibi,T. | Rice chitinase gene: cDNA cloning and stress-induced expression. | Plant Sci. | 76 | 211-218 | 1991 | - | CHT1 |
| 31038 | Yasuda H, Hayashi Y, Jomori T, Takaiwa F. | The correlation between expression and localization of a foreign gene product in rice endosperm. | Plant Cell Physiol. | 47(6) | 756-63 | 2006 | 16614094 | CHT1 |
| 37444 | Wu T., Tang D., Chen W., Huang H., Wang R., Chen Y. | Expression of antimicrobial peptides thanatin(S) in transgenic Arabidopsis enhanced resistance to phytopathogenic fungi and bacteria. | Gene | 527(1) | 235-42 | 2013 | 23820081 | CHT1 |
| 21409 | Kato,H. and Minamikawa,T. | Identification and characterization of a rice cysteine endopeptidase that digests glutelin. | Eur. J. Biochem. | 239(2) | 310-316 | 1996 | 8706734 | REP2 REP1 |
| 34096 | Kato H., Sutoh K., Minamikawa T. | Identification, cDNA cloning and possible roles of seed-specific rice asparaginyl endopeptidase, REP-2. | Planta | 217(4) | 676-85 | 2003 | 12684786 | REP2 REP1 |
| 37270 | A Shintani, H Kato, T Minamikawa | Hormonal regulation of expression of two cysteine endopeptidase genes in rice seedlings. | Plant Cell Physiol. | 38(11) | 1242-8 | 1997 | 9435140 | REP1 |
| 30635 | Kusaba,M., Ito,H., Morita,R., Iida,S., Sato,Y., Fujimoto,M., Kawasaki,S., Tanaka,R., Hirochika,H., Nishimura,M. and Tanaka,A. | Rice NON-YELLOW COLORING1 is involved in light-harvesting complex II and grana degradation during leaf senescence | Plant Cell | 19(4) | 1362-1375 | 2007 | 17416733 | NOL NYC1 PLS4 |
| 31529 | Morita R,Sato Y,Masuda Y,Nishimura M,Kusaba M | Defect in non-yellow coloring 3, an alpha/beta hydrolase-fold family protein, causes a stay-green phenotype during leaf senescence in rice. | Plant J. | 59 | 940-952 | 2009 | 19453447 | NOL NHL2 NHL1 NYC3 NHL3 NYC1 |
| 31946 | Sato Y,Morita R,Katsuma S,Nishimura M,Tanaka A,Kusaba M | Two short-chain dehydrogenase/reductases, NON-YELLOW COLORING 1 and NYC1-LIKE, are required for chlorophyll b and light-harvesting complex II degradation during senescence in rice. | Plant J. | 57 | 120-31 | 2009 | 18778405 | NOL NYC1 |
| 33356 | Tang,Y., Li,M., Chen,Y., Wu,P., Wu,G. and Jiang,H. | Knockdown of OsPAO and OsRCCR1 cause different plant death phenotypes in rice | J. Plant Physiol. | 168(16) | 1952-1959 | 2011 | 21807436 | RCCR1 EAS1 RCCR3 RCCR2 |
| 43118 | Xie Q., Liang Y., Zhang J., Zheng H., Dong G., Qian Q., Zuo J. | Involvement of a Putative Bipartite Transit Peptide in Targeting Rice Pheophorbide a Oxygenase into Chloroplasts for Chlorophyll Degradation during leaf senescence. | J Genet Genomics | 43(3) | 145-54 | 2016 | 27020034 | EAS1 |
| 54207 | Wang X., Wang Z., Lu Y., Huang J., Hu Z., Lou J., Fan X., Gu Z., Liu P., Ma B., Chen X. | OsACA9, an Autoinhibited Ca2+-ATPase, Synergically Regulates disease resistance and leaf senescence in Rice. | Int J Mol Sci | 25(3) | 2024 | 38339152 | ACA9 RLCK354 EXS WAK29 WAK46 _ _ _ | |
| 54483 | Shobade S.O., Zabotina O.A., Nilsen-Hamilton M. | Plant root associated chitinases: structures and functions. | Front Plant Sci | 15 | 1344142 | 2024 | 38362446 | CHT9 |
| 54218 | Zhang H., Mu D., Li Y., Li X., Yan X., Li K., Jiao Y., Li J., Lin H., Lin W., Fang C. | Glutathione S-transferase activity facilitates rice tolerance to the barnyard grass root exudate DIMBOA. | BMC Plant Biol. | 24(1) | 117 | 2024 | 38365588 | GSTU36 GSTU5 |
| 44519 | Zhang Z., Zhang F., Cheng Z.J., Liu L.L., Lin Q.B., Wu F.Q., Zhang H., Wang J.L., Wang J., Guo X.P., Zhang X., Lei C.L., Zhao Z.C., Zhu S.S., Wan J.M. | Functional characterization of rice CW-domain containing zinc finger proteins involved in histone recognition. | Plant Sci. | 263 | 168-176 | 2017 | 28818372 | CWZF3 CWZF5 CWZF6 WG7 |
| 47715 | Huang Y., Bai X., Cheng N., Xiao J., Li X., Xing Y. | Wide Grain 7 increases grain width by enhancing H3K4me3 enrichment in the OsMADS1 promoter in rice (Oryza sativa L.). | Plant J. | 2019 | 31830332 | WG7 | ||
| 54406 | Yang T., Song L., Hu J., Qiao L., Yu Q., Wang Z., Chen X., Lu G.D. | Magnaporthe oryzae effector AvrPik-D targets a transcription factor WG7 to suppress rice immunity. | Rice (N Y) | 17(1) | 14 | 2024 | 38351214 | WG7 |
| 32646 | Satoh-Cruz M,Crofts AJ,Takemoto-Kuno Y,Sugino A,Washida H,Crofts N,Okita TW,Ogawa M,Satoh H,Kumamaru T | Protein Disulfide Isomerase Like 1-1 Participates in the Maturation of Proglutelin Within the Endoplasmic Reticulum in Rice Endosperm. | Plant Cell Physiol. | 51(9) | 1581-1593 | 2010 | 20627947 | PDIL1-1 |
| 36062 | Kim Y.J., Yeu S.Y., Park B.S., Koh H.J., Song J.T., Seo H.S. | Protein disulfide isomerase-like protein 1-1 controls endosperm development through regulation of the amount and composition of seed proteins in rice. | PLoS ONE | 7(9) | e44493 | 2012 | 22970232 | CP1 PDIL1-1 |
| 45119 | Xia K., Zeng X., Jiao Z., Li M., Xu W., Nong Q., Mo H., Cheng T., Zhang M. | Formation of Protein Disulfide Bonds Catalyzed by OsPDIL1;1 is Mediated by MicroRNA5144-3p in Rice. | Plant Cell Physiol. | 59(2) | 331-342 | 2018 | 29194535 | PDIL1-1 MIR5144 |
| 46311 | Kretzschmar T., Margaret Anne F Pelayo, Kurniawan R Trijatmiko, Lourd Franz M Gabunada, Alam R., Jimenez R., Merlyn S Mendioro, Inez H Slamet-Loedin, Sreenivasulu N., Julia Bailey-Serres, Abdelbagi M Ismail, David J Mackill, Endang M Septiningsih | A trehalose-6-phosphate phosphatase enhances anaerobic germination tolerance in rice. | Nat Plants | 1 | 15124 | 2015 | 27250677 | TPP7 |
| 54719 | CHEN Guang, LI Jia, DU Rui-ying, WANG Xu | pOsHAK1 :OsFLN2 Expression Enhances the drought tolerance by Altering Sugar Metabolism in Rice | BIOTECHNOLOGY BULLETIN | 38(8) | 92-100 | 2022 | - | HSA1 |
| 652 | Kay, S.A., B. Keith, K. Shinozaki, M.L. Chye and N.H. Chua | The rice phytochrome gene Structure, autoregulated expression and binding of GT-1 to a conserved site in the 5' upstream region. | Plant Cell | 1 | 351-360. | 1989 | 2535506 | PHYA |
| 20670 | Takano, M., H. Kanegae, T. Shinomura, A. Miyao, H. Hirochika, and M. Furuya | Isolation and characterization of rice phytochrome A mutants. | Plant Cell | 13 | 521-534 | 2001 | 11251094 | PHYA |
| 21197 | Dehesh,K., Hung,H., Tepperman,J.M. and Quail,P.H. | GT-2: a transcription factor with twin autonomous DNA-binding domains of closely related but different target sequence specificity. | EMBO J. | 11(11) | 4131-4144 | 1992 | 1396594 | _ PHYA |
| 21418 | Kay,S.A., Keith,B., Shinozaki,K. and Chua,N.H. | The sequence of the rice phytochrome gene. | Nucleic Acids Res. | 17(7) | 2865-2866 | 1989 | 2717416 | PHYA |
| 37519 | J F Martínez-García, P H Quail | The HMG-I/Y protein PF1 stimulates binding of the transcriptional activator GT-2 to the PHYA gene promoter. | Plant J. | 18(2) | 173-83 | 1999 | 10363369 | PHYA _ _ |
| 37520 | M Ni, K Dehesh, J M Tepperman, P H Quail | GT-2: in vivo transcriptional activation activity and definition of novel twin DNA binding domains with reciprocal target sequence selectivity. | Plant Cell | 8(6) | 1041-59 | 1996 | 8672890 | _ PHYA |
| 20381 | Wang, W.M. and L.H. Zhu | A stamenless 1 rice mutant, transforms stamens partially into pistils. | RGN | 17 | 20-21 | 2000 | - | SL1 |
| 30130 | A. Horigome, K. Ikeda, M. Ito, Y. Yamaguchi and Y. Nagato | OPEN BEAKgene regulates floral morphogenesis in rice. | RGN | 22 | 39-41 | 2005 | - | SL1 |
| 31502 | Horigome,A., Nagasawa,N., Ikeda,K., Ito,M., Itoh,J.I. and Nagato,Y. | Rice OPEN BEAK is a negative regulator of class 1 knox genes and a positive regulator of class B floral homeotic gene | Plant J. | 58 | 724-36 | 2009 | 19207212 | SL1 |
| 31530 | Xiao H,Tang J,Li Y,Wang W,Li X,Jin L,Xie R,Luo H,Zhao X,Meng Z,He G,Zhu L | STAMENLESS 1, encoding a single C2H2 zinc finger protein, regulates floral organ identity in rice. | Plant J. | 59 | 789-801 | 2009 | 19453444 | SL1 |
| 31910 | Huang, Ji; Wang, Jian Fei; Wang, Qi Hong; Zhang, Hong Sheng | Identification of a rice zinc finger protein whose expression is transiently induced by drought, cold but not by salinity and abscisic acid | DNA Seq. | 16 | 130-136 | 2005 | 16147864 | ZFP245 |
| 32005 | Luo H,Li Y,Yang Z,Zhong B,Xie R,Ren M,Luo D,He G | Fine mapping of a pistilloid-stamen (PS) gene on the short arm of chromosome 1 in rice. | Genome | 49 | 1016-22 | 2006 | 17036076 | SL1 |
| 32817 | Duan Y., Diao Z., Liu H., Cai M., Wang F., Lan T., Wu W. | Molecular cloning and functional characterization of OsJAG gene based on a complete-deletion mutant in rice (Oryza sativa L.). | Plant Mol. Biol. | 74(6) | 605-615 | 2010 | 20938801 | SL1 |
| 36360 | Wu X., Tang D., Li M., Wang K., Cheng Z. | Loose Plant Architecture1, an INDETERMINATE DOMAIN protein involved in shoot gravitropism, regulates plant architecture in rice. | Plant Physiol. | 161(1) | 317-29 | 2013 | 23124325 | LPA1 |
| 43252 | Wang F., Coe R.A., Karki S., Wanchana S., Thakur V., Henry A., Lin H.C., Huang J., Peng S., Quick W.P. | Overexpression of OsSAP16 Regulates Photosynthesis and the Expression of a Broad Range of Stress Response Genes in Rice (Oryza sativa L.). | PLoS ONE | 11(6) | e0157244 | 2016 | 27303811 | SAP16 |
| 45162 | Wang X., Zou B., Shao Q., Cui Y., Lu S., Zhang Y., Huang Q., Huang J., Hua J. | Natural variation reveals that OsSAP16 controls low-temperature germination in rice. | J. Exp. Bot. | 69(3) | 413-421 | 2018 | 29237030 | SAP16 |
| 48816 | Lei L., Zheng H., Bi Y., Yang L., Liu H., Wang J., Sun J., Zhao H., Li X., Li J., Lai Y., Zou D. | Identification of a Major QTL and Candidate Gene Analysis of salt tolerance at the Bud Burst Stage in Rice (Oryza sativa L.) Using QTL-Seq and RNA-Seq. | Rice (N Y) | 13(1) | 55 | 2020 | 32778977 | SAP16 |
| 36987 | Yan W., Liu H., Zhou X., Li Q., Zhang J., Lu L., Liu T., Liu H., Zhang C., Zhang Z., Shen G., Yao W., Chen H., Yu S., Xie W., Xing Y. | Natural variation in Ghd7.1 plays an important role in grain yield and adaptation in rice. | Cell Res. | 23(7) | 969-71 | 2013 | 23507971 | HD2 |
| 45148 | Jing L., Rui X., Chunchao W., Lan Q., Xiaoming Z., Wensheng W., Yingbin D., Lizhen Z., Yanyan W., Yunlian C., Lifang Z., Weihua Q., Qingwen Y. | A heading date QTL, qHD7.2, from wild rice (Oryza rufipogon) delays flowering and shortens panicle length under long-day conditions. | Sci Rep | 8(1) | 2928 | 2018 | 29440759 | HD2 |
| 42346 | Tu B., Hu L., Chen W., Li T., Hu B., Zheng L., Lv Z., You S., Wang Y., Ma B., Chen X., Qin P., Li S. | Disruption of OsEXO70A1 Causes Irregular Vascular Bundles and Perturbs Mineral Nutrient Assimilation in Rice. | Sci Rep | 5 | 18609 | 2015 | 26691393 | EXO70A4 EXO70D1 RLS2 EXO70F3 EXO70F1 EXO70A3 EXO70FX13 |
| 49516 | Xing Y., Wang N., Zhang T., Zhang Q., Du D., Chen X., Lu X., Zhang Y., Zhu M., Liu M., Sang X., Li Y., Ling Y., He G. | SHORT-ROOT 1 is critical to cell division and tracheary element development in rice roots. | Plant J. | 105(5) | 1179-1191 | 2021 | 33231904 | SR1 |
| 54479 | Li F., Yan L., Shen J., Liao S., Ren X., Cheng L., Li Y., Qiu Y. | Fine mapping and breeding application of two brown planthopper resistance genes derived from landrace rice. | PLoS ONE | 19(4) | e0297945 | 2024 | 38625904 | BPH46 |
| 2 | Adachi, T. | Dwarfness and leafy head newly found in rice. | Agric. & Hort. | 10(4) | 1048-1050. | 1935 | - | LHD |
| 3 | Ahn, S. and S.D. Tanksley | Comparative linkage maps of the rice and maize genomes. | Proc. Natl. Acad. Sci. U.S.A. | 90 | 7980-7984. | 1993 | 8103599 | |
| 5 | Ahn, S., J.A. Anderson, N.E. Sorrels and S.D. Tanksley | Homologous relationships of rice, wheat and maize chromosome. | Mol. Gen. Genet. | 241 | 483-490. | 1993 | 7903411 | |
| 6 | Amemiya, A. and H. Akemine | Biochemical genetic studies on the root growth inhibiting complementary lethal genes on rice plant. | Bull. Natl. Inst. Agric. Sci., Ser.D | 10 | 139-226. | 1963 | - | HWC1 HWC2 |
| 8 | Angeles, E.R., G.S. Khush and E.A. Heinrichs | New genes for resistance to whitebacked planthopper in rice. | Crop Sci. | 21(1) | 47-50. | 1981 | - | WBPH2 WBPH1 |
