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Ref Id Author Title Journal Volume Pages Year PubMed ID CGSNL
Gene Symbol
20767 Pelucchi, N., F. Fornara, C. Favalli, S. Masiero, C. Lago, M. Enrico Pe, L. Colombo and M.M. Kater Comparative analysis of rice MADS-box genes expressed during flower development. Sex. Plant Reprod. 15 113-122 2002 - MADS26 PAP2 MADS22
21784 Sentoku,N., Kato,H., Kitano,H. and Imai,R. OsMADS22, an STMADS11-like MADS-box gene of rice, is expressed in non-vegetative tissues and its ectopic expression induces spikelet meristem indeterminacy. Molecular Genetics & Genomics (Molecular General Genetics up to 2001) 273(1) 1-9 2005 15682279 MADS22
36423 Yoshida A., Sasao M., Yasuno N., Takagi K., Daimon Y., Chen R., Yamazaki R., Tokunaga H., Kitaguchi Y., Sato Y., Nagamura Y., Ushijima T., Kumamaru T., Iida S., Maekawa M., Kyozuka J. TAWAWA1, a regulator of rice inflorescence architecture, functions through the suppression of meristem phase transition. Proc. Natl. Acad. Sci. U.S.A. 110(2) 767-72 2013 23267064 MADS22 MADS47 G1L5 MADS55
37294 Lee S., Sang Chul Choi, An G. Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses. Plant J. 54(1) 93-105 2008 18182025 MADS47 MADS22 MADS55
37359 Olga N Danilevskaya, Hermon P., Hantke S., Michael G Muszynski, Kollipara K., Evgueni V Ananiev Duplicated fie genes in maize: expression pattern and imprinting suggest distinct functions. Plant Cell 15(2) 425-38 2003 12566582 FIE2
41636 Ma K., Zhang D., Liu Y., Ouyang Y., Li J., Hu C., Yao J. Ectopic expression of EbFIE from apomictic Eulaliopsis binata in rice results in pleiotropic phenotypes likely due to interaction with OsCLF. Plant Sci. 234 86-96 2015 25804812 CLF FIE1 FIE2
45938 Li Z., Fu X., Wang Y., Liu R., He Y. Polycomb-mediated gene silencing by the BAH-EMF1 complex in plants. Nat. Genet. 50(9) 1254-1261 2018 30082786 SHL1 SHL2 EBL1 CCP1
35247 Mosa K.A., Kumar K., Chhikara S., McDermott J., Liu Z., Musante C., White J.C., Dhankher O.P. Members of rice plasma membrane intrinsic proteins subfamily are involved in arsenite permeability and tolerance in plants. Transgenic Res. 21(6) 1265-77 2012 22350764 PIP2;6 PIP2;7 PIP2;4
41563 Hong-Li Lian, Yu X., Ye Q., Ding X., Kitagawa Y., Sang-Soo Kwak, Wei-Ai Su, Zhang-Cheng Tang, Xiao-Song Ding The role of aquaporin RWC3 in drought avoidance in rice. Plant Cell Physiol. 45(4) 481-9 2004 15111723 PIP1;3
42368 Xue G.P., Rae A.L., White R.G., Drenth J., Richardson T., McIntyre C.L. A strong root-specific expression system for stable transgene expression in bread wheat. Plant Cell Rep. 2015 26563345 PIP2;3 _ PR1-101 _ _ _ _
42846 Mosa K.A., Kumar K., Chhikara S., Musante C., White J.C., Dhankher O.P. Enhanced Boron Tolerance in Plants Mediated by Bidirectional Transport Through Plasma Membrane Intrinsic Proteins. Sci Rep 6 21640 2016 26902738 PIP2;6 PIP1;3
44258 Chen Y., Han Y.H., Cao Y., Zhu Y.G., Rathinasabapathi B., Ma L.Q. Arsenic Transport in Rice and Biological Solutions to Reduce Arsenic Risk from Rice. Front Plant Sci 8 268 2017 28298917 PT8 MRP1 PIP2;7 ACR2.1 ACR2.2 PIP2;6 PIP2;4 NIP3;2 LSI6 NIP1;1 ASA NRAMP1 LSI1 HAC1;1 HAC1;2 LSI2 _ GRX9 GRX4
51360 Zhang M., Shi H., Li N., Wei N., Tian Y., Peng J., Chen X., Zhang L., Zhang M., Dong H. Aquaporin OsPIP2;2 links the H2O2 signal and a membrane-anchored transcription factor to promote plant defense. Plant Physiol. 188(4) 2325-2341 2022 34958388 MAMYB PIP1;3 PIP2;6 PIP2;3 PIP2;2
32409 Hui Zhang, Wanqi Liang, Xijia Yang, Xue Luo, Ning Jiang, Hong Ma, and Dabing Zhang. Carbon Starved Anther Encodes a MYB Domain Protein That Regulates Sugar Partitioning Required for Rice Pollen Development. Plant Cell 22 672-689 2010 20305120 MST8 CSA
44681 Chen H., Zhao Z., Liu L., Kong W., Lin Y., You S., Bai W., Xiao Y., Zheng H., Jiang L., Li J., Zhou J., Tao D., Wan J. Genetic analysis of a hybrid sterility gene that causes both pollen and embryo sac sterility in hybrids between Oryza sativa L. and Oryza longistaminata. Heredity 119(3) 166-173 2017 28657614 CSA _ S40
50863 Jing X.Q., Li W.Q., Zhou M.R., Shi P.T., Zhang R., Shalmani A., Muhammad I., Wang G.F., Liu W.T., Chen K.M. Correction to: Rice Carbohydrate‑Binding Malectin‑Like Protein, OsCBM1, Contributes to Drought‑Stress Tolerance by Participating in NADPH Oxidase‑Mediated ROS Production. Rice (N Y) 15(1) 3 2022 35015164 RPK3
21521 Li,L., Li,S., Tao,Y. and Kitagawa,Y. Molecular cloning of a novel water channel from rice: its products expression in Xenopus oocytes and involvement in chilling tolerance. Plant Sci. 154(1) 43-51 2000 10725557 PIP1A
31924 Lu G,Gao C,Zheng X,Han B Identification of OsbZIP72 as a positive regulator of ABA response and drought tolerance in rice. Planta. 229 605-15 2009 19048288 BZIP72
36389 Liu C., Fukumoto T., Matsumoto T., Gena P., Frascaria D., Kaneko T., Katsuhara M., Zhong S., Sun X., Zhu Y., Iwasaki I., Ding X., Calamita G., Kitagawa Y. Aquaporin OsPIP1;1 promotes rice salt resistance and seed germination. Plant Physiol. Biochem. 63 151-8 2013 23262183 PIP1A
37261 Yoshida T., Fujita Y., Sayama H., Kidokoro S., Maruyama K., Mizoi J., Shinozaki K., Kazuko Yamaguchi-Shinozaki AREB1, AREB2, and ABF3 are master transcription factors that cooperatively regulate ABRE-dependent ABA signaling involved in drought stress tolerance and require ABA for full activation. Plant J. 61(4) 672-85 2010 19947981 BZIP23 BZIP72 BZIP46
41122 Scalera V.a, Gena P.a, Mastrodonato M.b, Kitagawa Y.c, Carulli S.a, Svelto M.a, Calamita G.a d Functional reconstitution of a rice aquaporin water channel, PIP1;1, by a micro-batchwise methodology Plant Physiology and Biochemistry 85 78-84 2014 - PIP1A
41562 S Kawasaki, C Borchert, M Deyholos, H Wang, S Brazille, K Kawai, D Galbraith, H J Bohnert Gene expression profiles during the initial phase of salt stress in rice. Plant Cell 13(4) 889-905 2001 11283343 PIP1;3 PIP2;2 PIP1A
41959 Sharma N., Tripathi A., Sanan-Mishra N. Profiling the expression domains of a rice-specific microRNA under stress. Front Plant Sci 6 333 2015 26029232 MIR820C MIR820E MIR820D MIR820B MIR820A NAC123 PIP1A DRM2
45467 Chu T.T.H., Hoang T.G., Trinh D.C., Bureau C., Meynard D., Vernet A., Ingouff M., Do N.V., Périn C., Guiderdoni E., Gantet P., Maurel C., Luu D.T. Sub-cellular markers highlight intracellular dynamics of membrane proteins in response to abiotic treatments in rice. Rice (N Y) 11(1) 23 2018 29651780 TIP1;1 GAP1 SCAMP1 TIP2;2 PIP1A PIP2;4 GLUP4 PIP2;5
47881 Liu S., Fukumoto T., Gena P., Feng P., Sun Q., Li Q., Matsumoto T., Kaneko T., Zhang H., Zhang Y., Zhong S., Zeng W., Katsuhara M., Kitagawa Y., Wang A., Calamita G., Ding X. Ectopic expression of a rice plasma membrane intrinsic protein (OsPIP1;3) promotes plant growth and water uptake. Plant J. 102(4) 779-796 2020 31872463 PIP1;2 PIP1;3 PIP1A
37540 Ryoo,N., Eom,J.-S., Kim,H.-B., Thuy Vo,B., Lee,S.-W., Hahn,T.-R. and Jeon,J.-S. Expression and Functional Analysis of Rice Plastidic Maltose Transporter, OsMEX1 J Korean Soc Appl Biol Chem 56(2) 149-155 2013 - MT
479 Singh, K., D.S. Multani and G.S. Khush A new brittle culm mutant in rice. RGN 11 91-92. 1994 - BC6
31696 Yan C,Yan S,Zeng X,Zhang Z,Gu M Fine mapping and isolation of Bc7(t), allelic to OsCesA4. J Genet Genomics 34 1019-27 2007 18037139 BC7
32151 Zhang B,Deng L,Qian Q,Xiong G,Zeng D,Li R,Guo L,Li J,Zhou Y A missense mutation in the transmembrane domain of CESA4 affects protein abundance in the plasma membrane and results in abnormal cell wall biosynthesis in rice. Plant Mol. Biol. 71(4-5) 509-24 2009 19697141 BC7
38882 Rao Y.C.a, Yang Y.L.b, Xin D.D.a, Li X.J.a, Zhai K.E.a, Ma B.J.a, Pan J.W.a, Qian Q.b, Zeng D.L.b Characterization and cloning of a brittle culm mutant (bc88) in rice (Oryza sativa L.) Chinese Science Bulletin 58 3000-3006 2013 - BC6
42857 Ma J., Cheng Z., Chen J., Shen J., Zhang B., Ren Y., Ding Y., Zhou Y., Zhang H., Zhou K., Wang J.L., Lei C., Zhang X., Guo X., Gao H., Bao Y., Wan J.M. Phosphatidylserine Synthase Controls Cell Elongation Especially in the Uppermost Internode in Rice by Regulation of Exocytosis. PLoS ONE 11(4) e0153119 2016 27055010 SUI2 SUI1 SUI3 BC7
44000 Hu K., Cao J., Zhang J., Xia F., Ke Y., Zhang H., Xie W., Liu H., Cui Y., Cao Y., Sun X., Xiao J., Li X., Zhang Q., Wang S. Improvement of multiple agronomic traits by a disease resistance gene via cell wall reinforcement. Nat Plants 3 17009 2017 28211849 CESA7 EXPA1 JAR2 BC6 EXPA5 XA4 BC7
44243 Li F., Xie G., Huang J., Zhang R., Li Y., Zhang M., Wang Y., Li A., Li X., Xia T., Qu C., Hu F., Ragauskas A.J., Peng L. OsCESA9 conserved-site mutation leads to largely enhanced plant lodging resistance and biomass enzymatic saccharification by reducing cellulose DP and crystallinity in rice. Plant Biotechnol. J. 2017 28117552 BC6 BC7 CESA7
44851 Schneider R., Tang L., Lampugnani E.R., Barkwill S., Lathe R., Zhang Y., McFarlane H.E., Pesquet E., Niittyla T., Mansfield S.D., Zhou Y., Persson S. Two Complementary Mechanisms Underpin Cell Wall Patterning during Xylem Vessel Development. Plant Cell 29(10) 2433-2449 2017 28947492 CSIL2 BC6 CSIL1 _ CESA7 BC7
46479 Li F., Liu S., Xu H., Xu Q. A novel FC17/CESA4 mutation causes increased biomass saccharification and lodging resistance by remodeling cell wall in rice. Biotechnol Biofuels 11 298 2018 30410573 BC7 BC6 CESA7 BC12 _ IRX10
48376 Xu Y., Hu D., Hou X., Shen J., Liu J., Cen X., Fu J., Li X., Hu H., Xiong L. OsTMF attenuates cold tolerance by affecting cell wall properties in rice. New Phytol. 227(2) 498-512 2020 32176820 SIP25 PRP1.3 CESA7 PRP1.4 PRP1.2 BURP16 BC6 BC7 POX1 PRX77 PRX128 PRX132 PRP3 _ _
20581 Cha, K.-W., Y.-J. Lee, H.-J. Koh, B.-M. Lee, Y.-W. Nam, N.-C. Paek Isolation, characterization, and mapping of the stay green mutant in rice. Theor. Appl. Genet. 104 526-532 2002 12582654 SGR
30561 S. Hortensteiner Chlorophyll degradation during senescence Annu. Rev. Plant Biol. 57 55-77 2006 - SGR
30562 Armstead I, Donnison I, Aubry S, Harper J, Hortensteiner S, James C, Mani J, Moffet M, Ougham H, Roberts L, Thomas A, Weeden N, Thomas H, King I. Cross-species identification of Mendel's I locus. Science 315 73 2007 17204643 SGR
30563 Park SY, Yu JW, Park JS, Li J, Yoo SC, Lee NY, Lee SK, Jeong SW, Seo HS, Koh HJ, Jeon JS, Park YI, Paek NC. The senescence-induced staygreen protein regulates chlorophyll degradation . Plant Cell 19(5) 649-1664 2007 17513504 SGR
30564 Jiang H, Li M, Liang N, Yan H, Wei Y, Xu X, Liu J, Xu Z, Chen F, Wu G. Molecular cloning and function analysis of the stay green gene in rice. Plant J. 52(2) 197-209 2007 17714430 SGR
30565 Sato Y, Morita R, Nishimura M, Yamaguchi H, Kusaba M. Mendel's green cotyledon gene encodes a positive regulator of the chlorophyll-degrading pathway. Proc. Natl. Acad. Sci. U.S.A. 104 14169 2007 17709752 NYC1 CHL SGR
33356 Tang,Y., Li,M., Chen,Y., Wu,P., Wu,G. and Jiang,H. Knockdown of OsPAO and OsRCCR1 cause different plant death phenotypes in rice J. Plant Physiol. 168(16) 1952-1959 2011 21807436 EAS1 RCCR3 RCCR1 RCCR2
36846 Wu H.B., Wang B., Chen Y., Liu Y.G., Chen L. Characterization and fine mapping of the rice premature senescence mutant ospse1. Theor. Appl. Genet. 126(7) 1897-907 2013 23624440 PSE1 SGR NYC1
44900 Piao W., Han S.H., Sakuraba Y., Paek N.C. Rice 7-Hydroxymethyl Chlorophyll a Reductase Is Involved in the Promotion of Chlorophyll Degradation and Modulates Cell Death Signaling. Mol. Cells 40(10) 773-786 2017 29047257 SGR NOL SPL-HM143 NYC3 RCCR1 NYC1 EAS1
46572 Xing Y., Guo S., Chen X., Du D., Liu M., Xiao Y., Zhang T., Zhu M., Zhang Y., Sang X., He G., Wang N. Nitrogen Metabolism is Affected in the Nitrogen-Deficient Rice Mutant ESL4 with a Calcium-Dependent Protein Kinase Gene Mutation. Plant Cell Physiol. 59(12) 2512-2525 2018 30165687 NAC58 GLN1;2 ESL4 NOL SGR ICL
46830 Yu Yang Peng, Li Li Liao, Liu S., Miao Miao Nie, Li J., Lu Dan Zhang, Jian Feng Ma, Zhi Chang Chen Magnesium Deficiency Triggers SGR-Mediated Chlorophyll Degradation for Magnesium Remobilization. Plant Physiol. 181(1) 262-275 2019 31289214 SGR SGRL
48410 Shin D., Lee S., Kim T.H., Lee J.H., Park J., Lee J., Lee J.Y., Cho L.H., Choi J.Y., Lee W., Park J.H., Lee D.W., Ito H., Kim D.H., Tanaka A., Cho J.H., Song Y.C., Hwang D., Purugganan M.D., Jeon J.S., An G., Nam H.G. Natural variations at the Stay-Green gene promoter control lifespan and yield in rice cultivars. Nat Commun 11(1) 2819 2020 32499482 SGR
32049 Zhou J, Jiao F, Wu Z, Li Y, Wang X, He X, Zhong W, Wu P. OsPHR2 Is Involved in Phosphate-Starvation Signaling and Excessive Phosphate Accumulation in Shoots of Plants. Plant Physiol. 146(4) 1673-86. 2008 18263782 LTN1 PHR1 PAP10 PHR2
33000 Wu Z. , Ren H. , McGrath S.P. , Wu P. , Zhao F.J. Investigating the Contribution of the Phosphate Transport Pathway to Arsenic Accumulation in Rice. Plant Physiol. 157(1) 498-508 2011 21715673 PT8 PHF1 PHR2
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