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Reference Detail
| Reference | ||
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| Author | Huang Y., Liu J., Cheng L., Xu D., Liu S., Hu H., Ling Y., Yang R., Zhang Y. | |
| Title | Genome-Wide Analysis of the Histone Modification Gene (<i>HM</i>) Family and Expression Investigation during Anther Development in Rice (<i>Oryza sativa</i> L.). | |
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Abstract: Histone modification plays a crucial role in chromatin remodeling and regulating gene expression, and participates in various biological processes, including plant development and responses to stress. Several gene families related to histone modification have been reported in various plant species. However, the identification of members and their functions in the rice (<i>Oryza sativa</i> L.) <i>histone modification</i> gene family (<i>OsHM</i>) at the whole-genome level remains unclear. In this study, a total of 130 <i>OsHMs</i> were identified through a genome-wide analysis. The <i>OsHM</i> gene family can be classified into 11 subfamilies based on a phylogenetic analysis. An analysis of the genes structures and conserved motifs indicates that members of each subfamily share specific conserved protein structures, suggesting their potential conserved functions. Molecular evolutionary analysis reveals that a significant number of <i>OsHMs</i> proteins originated from gene duplication events, particularly segmental duplications. Additionally, transcriptome analysis demonstrates that <i>OsHMs</i> are widely expressed in various tissues of rice and are responsive to multiple abiotic stresses. Fourteen <i>OsHMs</i> exhibit high expression in rice anthers and peaked at different pollen developmental stages. RT-qPCR results further elucidate the expression patterns of these 14 <i>OsHMs</i> during different developmental stages of anthers, highlighting their high expression during the meiosis and tetrad stages, as well as in the late stage of pollen development. Remarkably, <i>OsSDG713</i> and <i>OsSDG727</i> were further identified to be nucleus-localized. This study provides a fundamental framework for further exploring the gene functions of <i>HMs</i> in plants, particularly for researching their functions and potential applications in rice anthers' development and male sterility. |
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| Journal | Plants (Basel) | |
| Country | China | |
| Volume | 13(17) | |
| Pages | ||
| Year | 2024 | |
| PubMed ID | 39273980 | |
| PubMed Central ID | 11396841 | |
| DOI | 10.3390/plants13172496 | |
| URL | - | |
| Relation | ||
| Gene | CHB703 CLF DSL1 GNA1 GNAT2 GSE3 GW6A HAC701 HAC703 HAC704 HAF701 HAG702 HAG703 HAG704 HAG706 HAG708 HAG710 HAG711 HAG713 HAG714 HAG719 HAG720 HAG721 HAG723 HAG725 HAG726 HAG727 HAM701 HAM702 HDA701 HDA704 HDA705 HDA707 HDA709 HDA712 HDA713 HDA716 HDA717 HDA718 HDAC1 HDAC10 HDAC2 HDAC3 HDAC6 HDT2 HDT701 HHC3 HHC7 JMJ702 JMJ703 JMJ705 JMJ706 JMJ707 JMJ715 JMJ718 JMJ719 LVP1 NAA10 PHD25 PHS1 PRMT1 PRMT10 PRMT3 PRMT4 PRMT5 PRMT6A PRMT6B PRMT7 SDG714 SDG715 SDG721 SDG725 SDG736 SDG741 SDG742 SDG748 SDG754 SE14 SET1 SET11 SET2 SET23 SET29 SET33 SET6 SET7 SIR2B SNAT1 SNAT2 SNAT3 SRT701 SUVH7 SWI3C _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ | |
| INSD | - | |
| Strain | Wild Core Collection | - |
| Induced Mutation Lines(NIG Collection) | - | |
| Sterile Seed Strain | - | |
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Lethal Embryo Mutantion Strain |
- | |
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Stages in Each Organ - Muant Lines (Gene) |
- | |
| Cultivated Varieties(NIG Collection) | - | |
| Stages in Each Organ | - | |
