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Reference Detail
| Reference | ||
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| Author | Agarwal P., Arora R., Ray S., Ashok K Singh, Vijay P Singh, Takatsuji H., Kapoor S., Akhilesh K Tyagi | |
| Title | Genome-wide identification of C2H2 zinc-finger gene family in rice and their phylogeny and expression analysis. | |
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Abstract: Transcription factors regulate gene expression in response to various external and internal cues by activating or suppressing downstream genes in a pathway. In this study, we provide a complete overview of the genes encoding C(2)H(2) zinc-finger transcription factors in rice, describing the gene structure, gene expression, genome localization, and phylogenetic relationship of each member. The genome of Oryza sativa codes for 189 C(2)H(2) zinc-finger transcription factors, which possess two main types of zinc-fingers (named C and Q). The Q-type zinc fingers contain a conserved motif, QALGGH, and are plant specific, whereas C type zinc fingers are found in other organisms as well. A genome-wide microarray based gene expression analysis involving 14 stages of vegetative and reproductive development along with 3 stress conditions has revealed that C(2)H(2) gene family in indica rice could be involved during all the stages of reproductive development from panicle initiation till seed maturation. A total of 39 genes are up-regulated more than 2-fold, in comparison to vegetative stages, during reproductive development of rice, out of which 18 are specific to panicle development and 12 genes are seed-specific. Twenty-six genes have been found to be up-regulated during three abiotic stresses and of these, 14 genes express specifically during the stress conditions analyzed while 12 are also up-regulated during reproductive development, suggesting that some components of the stress response pathways are also involved in reproduction. |
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| Journal | Plant Mol. Biol. | |
| Country | India | |
| Volume | 65(4) | |
| Pages | 467-85 | |
| Year | 2007 | |
| PubMed ID | 17610133 | |
| PubMed Central ID | - | |
| DOI | 10.1007/s11103-007-9199-y | |
| URL | - | |
| Relation | ||
| Gene | BHLH33 DRG9 DU13 EMF2A HDT701 IDD12 IDD13 IDD2 LPA1 NKD PROG1 SAP16 SL1 TML ZFP15 ZFP182 ZFP245 ZOS1-01 ZOS1-03 ZOS1-05 ZOS1-06 ZOS1-07 ZOS1-08 ZOS1-09 ZOS1-10 ZOS1-11 ZOS1-12 ZOS1-13 ZOS1-14 ZOS1-15 ZOS1-16 ZOS1-17 ZOS1-19 ZOS1-20 ZOS1-21 ZOS1-22 ZOS1-23 ZOS10-01 ZOS10-02 ZOS10-03 ZOS10-04 ZOS10-05 ZOS10-06 ZOS10-07 ZOS11-01 ZOS11-02 ZOS11-03 ZOS11-04 ZOS11-05 ZOS11-06 ZOS11-07 ZOS11-08 ZOS11-09 ZOS11-10 ZOS11-11 ZOS12-01 ZOS12-02 ZOS12-03 ZOS12-04 ZOS12-05 ZOS12-06 ZOS12-07 ZOS12-08 ZOS12-09 ZOS12-10 ZOS2-01 ZOS2-02 ZOS2-03 ZOS2-04 ZOS2-05 ZOS2-06 ZOS2-07 ZOS2-08 ZOS2-09 ZOS2-10 ZOS2-11 ZOS2-12 ZOS2-13 ZOS2-14 ZOS2-15 ZOS2-16 ZOS2-17 ZOS2-18 ZOS2-19 ZOS3-01 ZOS3-02 ZOS3-03 ZOS3-04 ZOS3-05 ZOS3-07 ZOS3-08 ZOS3-09 ZOS3-10 ZOS3-11 ZOS3-12 ZOS3-13 ZOS3-14 ZOS3-15 ZOS3-16 ZOS3-17 ZOS3-18 ZOS3-19 ZOS3-20 ZOS3-23 ZOS3-24 ZOS4-01 ZOS4-03 ZOS4-04 ZOS4-05 ZOS4-06 ZOS4-07 ZOS4-08 ZOS4-09 ZOS4-10 ZOS4-12 ZOS4-13 ZOS4-14 ZOS5-01 ZOS5-02 ZOS5-03 ZOS5-04 ZOS5-05 ZOS5-06 ZOS5-07 ZOS5-08 ZOS5-09 ZOS5-10 ZOS5-11 ZOS6-01 ZOS6-02 ZOS6-03 ZOS6-04 ZOS6-05 ZOS6-06 ZOS6-07 ZOS6-08 ZOS6-10 ZOS6-11 ZOS7-01 ZOS7-03 ZOS7-04 ZOS7-06 ZOS7-07 ZOS7-09 ZOS7-10 ZOS7-11 ZOS7-12 ZOS7-13 ZOS8-01 ZOS8-02 ZOS8-03 ZOS8-04 ZOS8-05 ZOS8-06 ZOS8-08 ZOS8-09 ZOS8-10 ZOS8-11 ZOS8-12 ZOS8-13 ZOS8-14 ZOS9-01 ZOS9-02 ZOS9-03 ZOS9-05 ZOS9-06 ZOS9-08 ZOS9-09 ZOS9-10 ZOS9-11 ZOS9-12 ZOS9-13 ZOS9-15 ZOS9-16 ZOS9-17 ZOS9-18 ZOS9-19 ZOS9-20 ZOS9-21 ZOSA ZOSB ZOSC ZOSD ZOSE ZOSF ZOSG ZOSH ZOSI ZOSJ | |
| INSD | - | |
| Strain | Wild Core Collection | - |
| Induced Mutation Lines(NIG Collection) | - | |
| Sterile Seed Strain | - | |
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Lethal Embryo Mutantion Strain |
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Stages in Each Organ - Muant Lines (Gene) |
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| Cultivated Varieties(NIG Collection) | - | |
| Stages in Each Organ | - | |
