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Reference Detail
| Reference | ||
|---|---|---|
| Author | Jiang X., Hong W.J., Lee S.K., Jung K.H. | |
| Title | Genome-Wide Identification and Analysis of Collar Region-Preferential Genes in Rice. | |
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Abstract: The collar region plays a crucial role in leaf angle formation and plant architecture, which is important for improving crop yield given the challenges of diminishing arable land and changing environmental conditions. To determine collar region-preferential genes (CRPGs) affecting plant architecture and crop yield, we conducted genome-wide transcriptomic analysis. By integrating our RNA sequencing data with public rice anatomical expression data, we identified 657 CRPGs. Verification involved testing six randomly selected CRPGs, all of which exhibited collar-preferential expression. The functional significance of CRPGs was assessed via Gene Ontology enrichment analysis, utilizing MapMan and KEGG, and literature analysis provided additional information for characterized CRPGs. Our findings revealed links between manipulating leaf angle and phytohormone-related pathways and stress responses. Moreover, based on the CRPGs, five transcription factors downstream of the <i>liguleless 1 (LG1)</i> gene were identified. Overall, the identified CRPGs provide potential targets for further research and breeding applications aimed at improving crop productivity by manipulating leaf architecture. |
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| Journal | Plants (Basel) | |
| Country | South Korea | |
| Volume | 12(16) | |
| Pages | ||
| Year | 2023 | |
| PubMed ID | 37631170 | |
| PubMed Central ID | 10458737 | |
| DOI | 10.3390/plants12162959 | |
| URL | - | |
| Relation | ||
| Gene | BHLH083 BZIP78 CRPG160 CRPG33 CRPG348 CRPG70 DOF29 LG1 MYB45 NAC55 TPS37 WRKY104 | |
| INSD | - | |
| Strain | Wild Core Collection | - |
| Induced Mutation Lines(NIG Collection) | - | |
| Sterile Seed Strain | - | |
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Lethal Embryo Mutantion Strain |
- | |
|
Stages in Each Organ - Muant Lines (Gene) |
- | |
| Cultivated Varieties(NIG Collection) | - | |
| Stages in Each Organ | - | |
