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Reference Detail
| Reference | ||
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| Author | Sanyal R.P., Prashar V., Jawali N., Sunkar R., Misra H.S., Saini A. | |
| Title | Molecular and Biochemical Analysis of Duplicated Cytosolic CuZn Superoxide Dismutases of Rice and <i>in silico</i> Analysis in Plants. | |
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Abstract: Superoxide dismutases (SODs, EC 1.15.1.1) are ubiquitous antioxidant metalloenzymes important for oxidative stress tolerance and cellular redox environment. Multiple factors have contributed toward the origin and diversity of SOD isoforms among different organisms. In plants, the genome duplication events, responsible for the generation of multiple gene copies/gene families, have also contributed toward the SOD diversity. However, the importance of such molecular events on the characteristics of SODs has not been studied well. This study investigated the effects of divergence on important characteristics of two block-duplicated rice cytosolic CuZn SODs (<i>OsCSD1</i>, <i>OsCSD4</i>), along with <i>in silico</i> assessment of similar events in other plants. The analysis revealed heterogeneity in gene length, regulatory regions, untranslated regions (UTRs), and coding regions of two <i>OsCSDs</i>. An inconsistency in the database-predicted <i>OsCSD1</i> gene structure was also identified and validated experimentally. Transcript analysis showed differences in the basal levels and stress responsiveness of <i>OsCSD1</i> and <i>OsCSD4</i>, and indicated the presence of two transcription start sites in the <i>OsCSD1</i>. At the amino acid level, the two OsCSDs showed differences at 18 sites; however, both exist as a homodimer, displaying typical CuZn SOD characteristics, and enhancing the oxidative stress tolerance of <i>Escherichia coli</i> cells. However, OsCSD4 showed higher specific activity as well as stability. The comparison of the two OsCSDs with reported thermostable CSDs from other plants identified regions likely to be associated with stability, while the homology modeling and superposition highlighted structural differences. The two OsCSDs displayed heteromeric interaction capability and forms an enzymatically active heterodimer (OsCSD1:OsCSD4) on co-expression, which may have significance as both are cytosolic. <i>In silico</i> analysis of 74 plant genomes revealed the prevalence of block duplications for multiple <i>CSD</i> copies (mostly cytosolic). The divergence and clustering analysis of CSDs suggested the possibility of an ancestral duplication event in monocots. Conserved SOD features indicating retention of SOD function among CSD duplicates were evident in few monocots and dicots. In most other species, the CSD copies lacked critical features and may not harbor SOD function; however, other feature-associated functions or novel functions might be present. These aspects of divergent <i>CSD</i> copies encoding co-localized CSDs may have implications in plant SOD functions in the cytosol and other organelles. |
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| Journal | Front Plant Sci | |
| Country | India | |
| Volume | 13 | |
| Pages | 864330 | |
| Year | 2022 | |
| PubMed ID | 35707617 | |
| PubMed Central ID | 9191229 | |
| DOI | 10.3389/fpls.2022.864330 | |
| URL | - | |
| Relation | ||
| Gene | SODCC1 SODCC2 | |
| INSD | - | |
| Strain | Wild Core Collection | - |
| Induced Mutation Lines(NIG Collection) | - | |
| Sterile Seed Strain | - | |
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Lethal Embryo Mutantion Strain |
- | |
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Stages in Each Organ - Muant Lines (Gene) |
- | |
| Cultivated Varieties(NIG Collection) | - | |
| Stages in Each Organ | - | |
