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Reference Detail
| Reference | ||
|---|---|---|
| Author | Kim M.S., Kang K.K., Cho Y.G. | |
| Title | Molecular and Functional Analysis of U-box E3 Ubiquitin Ligase Gene Family in Rice (<i>Oryza</i><i>sativa</i>). | |
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Abstract: Proteins encoded by U-box type Ubiquitin ligase (PUB) genes in rice are known to play an important role in plant responses to abiotic and biotic stresses. Functional analysis has revealed a detailed molecular mechanism involving PUB proteins in relation to abiotic and biotic stresses. In this study, characteristics of 77 <i>OsPUB</i> genes in rice were identified. Systematic and comprehensive analyses of the <i>OsPUB</i> gene family were then performed, including analysis of conserved domains, phylogenetic relationships, gene structure, chromosome location, cis-acting elements, and expression patterns. Through transcriptome analysis, we confirmed that 16 <i>OsPUB</i> genes show similar expression patterns in drought stress and blast infection response pathways. Numerous cis-acting elements were found in promoter sequences of 16 <i>OsPUB</i> genes, indicating that the <i>OsPUB</i> genes might be involved in complex regulatory networks to control hormones, stress responses, and cellular development. We performed qRT-PCR on 16 <i>OsPUB</i> genes under drought stress and blast infection to further identify the reliability of transcriptome and cis-element analysis data. It was confirmed that the expression pattern was similar to RNA-sequencing analysis results. The transcription of <i>OsPUB</i> under various stress conditions indicates that the PUB gene might have various functions in the responses of rice to abiotic and biotic stresses. Taken together, these results indicate that the genome-wide analysis of <i>OsPUB</i> genes can provide a solid basis for the functional analysis of U-box E3 Ubiquitin ligase genes. The molecular information of the U-box E3 Ubiquitin Ligase Gene family in rice, including gene expression patterns and cis-acting regulatory elements, could be useful for future crop breeding programs by genome editing. |
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| Journal | Int J Mol Sci | |
| Country | South Korea | |
| Volume | 22(21) | |
| Pages | ||
| Year | 2021 | |
| PubMed ID | 34769518 | |
| PubMed Central ID | 8584879 | |
| DOI | 10.3390/ijms222112088 | |
| URL | - | |
| Relation | ||
| Gene | ELF1 PUB1 PUB10 PUB12 PUB13 PUB14 PUB15 PUB16 PUB17 PUB18 PUB19 PUB2 PUB20 PUB21 PUB22 PUB23 PUB24 PUB25 PUB26 PUB28 PUB29 PUB3 PUB30 PUB31 PUB32 PUB33 PUB34 PUB35 PUB36 PUB37 PUB38 PUB39 PUB4 PUB40 PUB42 PUB43 PUB44 PUB45 PUB5 PUB58 PUB6 PUB60 PUB63 PUB64 PUB65 PUB66 PUB67 PUB68 PUB69 PUB7 PUB71 PUB72 PUB73 PUB74 PUB76 PUB77 PUB8 PUB9 RHS1 RLCK111 RLCK112 RLCK194 RLCK197 RLCK207 RLCK280 RLCK281 RLCK285 RLCK305 RLCK306 RLCK307 RLCK69 RLCK81 RLCK91 RLCK93 RSSB4 SPL11 UPS | |
| INSD | - | |
| Strain | Wild Core Collection | - |
| Induced Mutation Lines(NIG Collection) | - | |
| Sterile Seed Strain | - | |
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Lethal Embryo Mutantion Strain |
- | |
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Stages in Each Organ - Muant Lines (Gene) |
- | |
| Cultivated Varieties(NIG Collection) | - | |
| Stages in Each Organ | - | |
