Tools - Reference - Detail

Reference Detail

Reference
Author Muthuramalingam P., Jeyasri R., Bharathi RKAS., Suba V., Pandian S.T.K., Ramesh M.
Title Global integrated omics expression analyses of abiotic stress signaling HSF transcription factor genes in Oryza sativa L.: An in silico approach.
Abstract:
Among the significant transcription factors (TFs), HSF proteins play pivotal roles in the regulation of hormonal signal transduction and different abiotic stress (AbS) responses. Hence considering its importance, global omics expression analysis of HSF candidates was performed in rice (OsHSF). The current study identified 25 HSF family members and physically plotted them against the rice genome. These proteins were systematically analyzed for their physicochemical features, organization and expression signatures. Further, heatmap of both spatio-temporal and global plant hormones revealed the developmental tissues and hormone specific expression profiling of these genes respectively. Comparative genome mapping between OsHSF players in interrelated C4 grass species revealed the chromosome level synteny. Signalome analysis revealed the protein - protein interactions of OsHSF. Expression profiling of key players in response to stresses exhibited the new involvement in combined AbS (CAbS) responses. Our results are significantly valuable to decipher their functional analysis of CAbS tolerant in rice.
Journal Genomics
Country India
Volume
Pages
Year 2019
PubMed ID 31175978
PubMed Central ID -
DOI 10.1016/j.ygeno.2019.06.006
URL -
Relation
Gene HSFA1 HSFA2A HSFA2B HSFA2C HSFA2D HSFA2E HSFA3 HSFA4A HSFA5 HSFA6 HSFA7 HSFA9 HSFB1 HSFB2A HSFB2B HSFB2C HSFB4A HSFB4B HSFB4C HSFB4D HSFC1A HSFC1B HSFC2A HSFC2B SPL7
INSD -
Strain Wild Core Collection -
Induced Mutation Lines(NIG Collection) -
Sterile Seed Strain -
Lethal Embryo
Mutantion Strain
-
Stages in Each Organ
- Muant Lines (Gene)
-
Cultivated Varieties(NIG Collection) -
Stages in Each Organ -
/rice/oryzabase