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Reference Detail
| Reference | ||
|---|---|---|
| Author | Li N., Wang Y., Lu J., Liu C. | |
| Title | Genome-Wide Identification and Characterization of the ALOG Domain Genes in Rice. | |
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Abstract: The ALOG domain genes, named after the <i>Arabidopsis</i> LSH1 and <i>Oryza</i> G1 (ALOG) proteins, have frequently been reported as key developmental regulators in rice and <i>Arabidopsis</i>. However, the investigation of the ALOG gene family is limited. Here, we conducted a genome-wide investigation of the ALOG gene family in rice and six other species. In total, eighty-four ALOG domain genes were identified from the seven species, of which fourteen ALOG domain genes (<i>OsG1</i>/<i>G1Ls</i>) were identified in the rice genome. The fourteen <i>OsG1</i>/<i>G1Ls</i> were unevenly distributed on eight chromosomes, and we found that eight segmental duplications contributed to the expansion of <i>OsG1</i>/<i>G1Ls</i> in the rice genome. The eighty-four ALOG family genes from seven species were classified into six clusters, and the ALOG domain-defined motifs 1, 2, and 3 were highly conserved across species according to the phylogenetic and structural analysis. However, the newly identified motifs 4 and 5 were only present in monocots, indicating a specified function in monocots. Moreover, <i>OsG1</i>/<i>G1Ls</i> exhibited tissue-specific expression patterns. Coexpression analysis suggested that <i>OsG1</i> integrates <i>OsMADS50</i> and the downstream MADS-box genes, such as <i>OsMADS1</i>, to regulate the development of rice inflorescence; <i>OsG1L7</i> potentially associates with <i>OsMADS22</i> and <i>OsMADS55</i> to regulate stem elongation. In addition, comparative expression analysis revealed the conserved biological functions of ALOG family genes among rice, maize, and <i>Arabidopsis</i>. These results have shed light on the functional study of ALOG family genes in rice and other plants. |
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| Journal | International Journal of Genomics | |
| Country | China | |
| Volume | 2019 | |
| Pages | 2146391 | |
| Year | 2019 | |
| PubMed ID | 30923712 | |
| PubMed Central ID | 6409076 | |
| DOI | 10.1155/2019/2146391 | |
| URL | - | |
| Relation | ||
| Gene | BLS1 G1 G1L1 G1L10 G1L11 G1L12 G1L13 G1L2 G1L3 G1L4 G1L5 G1L7 G1L8 G1L9 MADS22 MADS50 MADS55 | |
| INSD | - | |
| Strain | Wild Core Collection | - |
| Induced Mutation Lines(NIG Collection) | - | |
| Sterile Seed Strain | - | |
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Lethal Embryo Mutantion Strain |
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Stages in Each Organ - Muant Lines (Gene) |
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| Cultivated Varieties(NIG Collection) | - | |
| Stages in Each Organ | - | |
