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Reference Detail
| Reference | ||
|---|---|---|
| Author | Hu L., He H., Zhu C., Peng X., Fu J., He X., Chen X., Ouyang L., Bian J., Liu S. | |
| Title | Genome-wide identification and phylogenetic analysis of the chalcone synthase gene family in rice. | |
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Abstract: The enzymes of the chalcone synthase family are also known as type III polyketide synthases (PKS), and produce a series of secondary metabolites in bacteria, fungi and plants. In a number of plants, genes encoding PKS comprise a large multigene family. Currently, detailed reports on rice (Oryza sativa) PKS (OsPKS) family genes and tissue expression profiling are limited. Here, 27 candidate OsPKS genes were identified in the rice genome,and 23 gene structures were confirmed by EST and cDNA sequencing; phylogenetic analysis has indicated that these 23 OsPKS members could be clustered into three groups (I-III). Comparative analysis has shown OsPKS08 and OsPKS26 could be classified with the CHS genes of other species. Two members OsPKS10 and OsPKS21 were grouped into anther specific chalcone synthase-like (ASCL) clade. Intron/exon structure analysis revealed that nearly all of the OsPKS members contained one phase-1 intron at a conserved Cys. Analysis of chromosomal localization and genome distribution showed that some of the members were distributed on a chromosome as a cluster. Expression data exhibited widespread distribution of the rice OsPKS gene family within plant tissues, suggesting functional diversification of the OsPKS genes. Our results will contribute to future study of the complexity of the OsPKS gene family in rice. |
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| Journal | J. Plant Res. | |
| Country | China | |
| Volume | 130(1) | |
| Pages | 95-105 | |
| Year | 2017 | |
| PubMed ID | 27878652 | |
| PubMed Central ID | - | |
| DOI | 10.1007/s10265-016-0871-7 | |
| URL | - | |
| Relation | ||
| Gene | CHS LAP6 PKS1 PKS10 PKS11 PKS12 PKS13 PKS14 PKS15 PKS16 PKS17 PKS18 PKS19 PKS2 PKS20 PKS22 PKS23 PKS24 PKS25 PKS27 PKS3 PKS4 PKS5 PKS6 PKS7 PKS8 PKS9 | |
| INSD | - | |
| Strain | Wild Core Collection | - |
| Induced Mutation Lines(NIG Collection) | - | |
| Sterile Seed Strain | - | |
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Lethal Embryo Mutantion Strain |
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Stages in Each Organ - Muant Lines (Gene) |
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| Cultivated Varieties(NIG Collection) | - | |
| Stages in Each Organ | - | |
