Tools - Reference - Detail

Reference Detail

Reference
Author Vij S., Giri J., Prasant Kumar Dansana, Kapoor S., Akhilesh K Tyagi
Title The receptor-like cytoplasmic kinase (OsRLCK) gene family in rice: organization, phylogenetic relationship, and expression during development and stress.
Abstract:
Receptor-like cytoplasmic kinases (RLCKs) in plants belong to the super family of receptor-like kinases (RLKs). These proteins show homology to RLKs in kinase domain but lack the transmembrane domain. Some of the functionally characterized RLCKs from plants have been shown to play roles in development and stress responses. Previously, 149 and 187 RLCK encoding genes were identified from Arabidopsis and rice, respectively. By using HMM-based domain structure and phylogenetic relationships, we have identified 379 OsRLCKs from rice. OsRLCKs are distributed on all 12 chromosomes of rice and some members are located on duplicated chromosomal segments. Several OsRLCKs probably also undergo alternative splicing, some having evidence only in the form of gene models. To understand their possible functions, expression patterns during landmark stages of vegetative and reproductive development as well as abiotic and biotic stress using microarray and MPSS-based data were analyzed. Real-time PCR-based expression profiling for a selected few genes confirmed the outcome of microarray analysis. Differential expression patterns observed for majority of OsRLCKs during development and stress suggest their involvement in diverse functions in rice. Majority of the stress-responsive OsRLCKs were also found to be localized within mapped regions of abiotic stress QTLs. Outcome of this study would help in selecting organ/development stage specific OsRLCK genes/targets for functional validation studies.
Journal Mol Plant
Country India
Volume 1(5)
Pages 732-50
Year 2008
PubMed ID 19825577
PubMed Central ID -
DOI 10.1093/mp/ssn047
URL -
Relation
Gene 8TAK2 BBS1 BPH15 BSR1 CTB4A FON1 PWL1 RLCK1 RLCK10 RLCK100 RLCK101 RLCK102 RLCK103 RLCK104 RLCK105 RLCK106 RLCK107 RLCK108 RLCK11 RLCK110 RLCK111 RLCK112 RLCK113 RLCK115 RLCK116 RLCK117 RLCK118 RLCK119 RLCK120 RLCK122 RLCK123 RLCK124 RLCK125 RLCK126 RLCK128 RLCK129 RLCK13 RLCK130 RLCK131 RLCK132 RLCK133 RLCK135 RLCK136 RLCK137 RLCK138 RLCK139 RLCK14 RLCK141 RLCK144 RLCK145 RLCK146 RLCK148 RLCK149 RLCK15 RLCK150 RLCK151 RLCK152 RLCK153 RLCK154 RLCK155 RLCK156 RLCK157 RLCK158 RLCK159 RLCK16 RLCK160 RLCK161 RLCK162 RLCK163 RLCK164 RLCK165 RLCK166 RLCK167 RLCK168 RLCK169 RLCK17 RLCK170 RLCK171 RLCK172 RLCK173 RLCK174 RLCK175 RLCK176 RLCK177 RLCK178 RLCK179 RLCK18 RLCK180 RLCK182 RLCK183 RLCK184 RLCK185 RLCK186 RLCK187 RLCK188 RLCK189 RLCK19 RLCK190 RLCK191 RLCK192 RLCK194 RLCK196 RLCK197 RLCK198 RLCK199 RLCK2 RLCK20 RLCK200 RLCK201 RLCK202 RLCK203 RLCK204 RLCK205 RLCK206 RLCK207 RLCK208 RLCK209 RLCK21 RLCK210 RLCK211 RLCK212 RLCK213 RLCK214 RLCK215 RLCK216 RLCK217 RLCK218 RLCK22 RLCK220 RLCK221 RLCK222 RLCK223 RLCK224 RLCK226 RLCK227 RLCK23 RLCK232 RLCK233 RLCK234 RLCK235 RLCK236 RLCK237 RLCK238 RLCK239 RLCK24 RLCK240 RLCK241 RLCK242 RLCK243 RLCK244 RLCK245 RLCK247 RLCK248 RLCK249 RLCK25 RLCK250 RLCK251 RLCK253 RLCK254 RLCK255 RLCK256 RLCK257 RLCK258 RLCK259 RLCK26 RLCK260 RLCK261 RLCK262 RLCK263 RLCK264 RLCK265 RLCK266 RLCK267 RLCK268 RLCK269 RLCK27 RLCK270 RLCK271 RLCK272 RLCK275 RLCK276 RLCK277 RLCK279 RLCK28 RLCK280 RLCK281 RLCK282 RLCK283 RLCK284 RLCK285 RLCK288 RLCK289 RLCK29 RLCK290 RLCK294 RLCK295 RLCK296 RLCK297 RLCK298 RLCK299 RLCK3 RLCK30 RLCK300 RLCK301 RLCK302 RLCK303 RLCK304 RLCK305 RLCK306 RLCK307 RLCK308 RLCK309 RLCK31 RLCK310 RLCK311 RLCK312 RLCK313 RLCK314 RLCK315 RLCK316 RLCK317 RLCK318 RLCK319 RLCK320 RLCK321 RLCK322 RLCK323 RLCK324 RLCK325 RLCK326 RLCK327 RLCK328 RLCK329 RLCK33 RLCK330 RLCK331 RLCK334 RLCK336 RLCK337 RLCK338 RLCK339 RLCK34 RLCK340 RLCK341 RLCK342 RLCK343 RLCK344 RLCK345 RLCK346 RLCK347 RLCK348 RLCK349 RLCK35 RLCK350 RLCK351 RLCK352 RLCK353 RLCK354 RLCK355 RLCK356 RLCK357 RLCK358 RLCK359 RLCK36 RLCK360 RLCK361 RLCK362 RLCK363 RLCK364 RLCK365 RLCK366 RLCK367 RLCK369 RLCK37 RLCK370 RLCK371 RLCK372 RLCK373 RLCK376 RLCK377 RLCK378 RLCK379 RLCK38 RLCK39 RLCK4 RLCK40 RLCK41 RLCK42 RLCK43 RLCK44 RLCK45 RLCK46 RLCK47 RLCK48 RLCK49 RLCK5 RLCK50 RLCK51 RLCK52 RLCK53 RLCK54 RLCK55 RLCK56 RLCK57 RLCK58 RLCK59 RLCK6 RLCK60 RLCK61 RLCK62 RLCK63 RLCK64 RLCK65 RLCK66 RLCK67 RLCK68 RLCK69 RLCK7 RLCK70 RLCK71 RLCK72 RLCK73 RLCK74 RLCK78 RLCK79 RLCK8 RLCK80 RLCK81 RLCK82 RLCK83 RLCK84 RLCK85 RLCK86 RLCK87 RLCK88 RLCK89 RLCK9 RLCK90 RLCK91 RLCK92 RLCK93 RLCK94 RLCK95 RLCK96 RLCK97 RLCK98 RLCK99 RUPO WAK100 WAK101 WAK102 WAK116 WAK118 WAK119 WAK12 WAK125 WAK126 WAK129 WAK15 WAK16 WAK27 WAK36 WAK4 WAK44 WAK45 WAK47 WAK61 WAK66 WAK68 WAK69 WAK70 WAK71 WAK72 WAK77 WAK81 WAK82 WAK93 WAK98 Z15 _
INSD -
Strain Wild Core Collection -
Induced Mutation Lines(NIG Collection) -
Sterile Seed Strain -
Lethal Embryo
Mutantion Strain 		-
Stages in Each Organ
- Muant Lines (Gene) 		-
Cultivated Varieties(NIG Collection) -
Stages in Each Organ -
/rice/oryzabase