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Author Lu Z., Huang X., Ouyang Y., Yao J.
Title Genome-wide identification, phylogenetic and co-expression analysis of OsSET gene family in rice.
Abstract:
SET domain is responsible for the catalytic activity of histone lysine methyltransferases (HKMTs) during developmental process. histone lysine methylation plays a crucial and diverse regulatory function in chromatin organization and genome function. Although several SET genes have been identified and characterized in plants, the understanding of OsSET gene family in rice is still very limited. In this study, a systematic analysis was performed and revealed the presence of at least 43 SET genes in rice genome. Phylogenetic and structural analysis grouped SET proteins into five classes, and supposed that the domains out of SET domain were significant for the specific of histone lysine methylation, as well as the recognition of methylated histone lysine. Based on the global microarray, gene expression profile revealed that the transcripts of OsSET genes were accumulated differentially during vegetative and reproductive developmental stages and preferentially up or down-regulated in different tissues. Cis-elements identification, co-expression analysis and GO analysis of expression correlation of 12 OsSET genes suggested that OsSET genes might be involved in cell cycle regulation and feedback. This study will facilitate further studies on OsSET family and provide useful clues for functional validation of OsSETs.
Journal PLoS ONE
Country China
Volume 8(6)
Pages e65426
Year 2013
PubMed ID 23762371
PubMed Central ID 3676427
DOI 10.1371/journal.pone.0065426
URL -
Relation
Gene CLF IEZ1 SDG714 SDG725 SDG736 _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _
INSD -
Strain Wild Core Collection -
Induced Mutation Lines(NIG Collection) -
Sterile Seed Strain -
Lethal Embryo
Mutantion Strain
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Stages in Each Organ
- Muant Lines (Gene)
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Cultivated Varieties(NIG Collection) -
Stages in Each Organ -
/rice/oryzabase