Tools - Reference - Detail
Reference Detail
Reference
|
Author
|
Jeong D.H., Park S., Zhai J., Gurazada S.G., De Paoli E., Meyers B.C., Green P.J.
|
Title
|
Massive analysis of rice small RNAs: mechanistic implications of regulated microRNAs and variants for differential target RNA cleavage.
|
Abstract:
Small RNAs have a variety of important roles in plant development, stress responses, and other processes. They exert their influence by guiding mRNA cleavage, translational repression, and chromatin modification. To identify previously unknown rice (Oryza sativa) microRNAs (miRNAs) and those regulated by environmental stress, 62 small RNA libraries were constructed from rice plants and used for deep sequencing with Illumina technology. The libraries represent several tissues from control plants and plants subjected to different environmental stress treatments. More than 94 million genome-matched reads were obtained, resulting in more than 16 million distinct small RNA sequences. This allowed an evaluation of ~400 annotated miRNAs with current criteria and the finding that among these, ~150 had small interfering RNA-like characteristics. Seventy-six new miRNAs were found, and miRNAs regulated in response to water stress, nutrient stress, or temperature stress were identified. Among the new examples of miRNA regulation were members of the same miRNA family that were differentially regulated in different organs and had distinct sequences Some of these distinct family members result in differential target cleavage and provide new insight about how an agriculturally important rice phenotype could be regulated in the panicle. This high-resolution analysis of rice miRNAs should be relevant to plant miRNAs in general, particularly in the Poaceae.
|
Journal
|
Plant Cell
|
Country
|
USA
|
Volume
|
23(12)
|
Pages
|
4185-207
|
Year
|
2011
|
PubMed ID
|
22158467
|
PubMed Central ID
|
3269859
|
DOI
|
-
|
URL
|
-
|
Relation
|
Gene
|
DCL1
MIR1317
MIR1318
MIR1319
MIR1319B
MIR1320
MIR1423
MIR1424
MIR1425
MIR1426
MIR1427
MIR1428A
MIR1428B
MIR1428C
MIR1428D
MIR1428E
MIR1428G
MIR1429
MIR1430
MIR1431
MIR1433
MIR1435
MIR1436
MIR1437
MIR1438
MIR1439
MIR1440
MIR1441
MIR1442
MIR156A
MIR156B
MIR156C
MIR156D
MIR156E
MIR156F
MIR156G
MIR156I
MIR156K
MIR156L
MIR159A
MIR160A
MIR160B
MIR160C
MIR160D
MIR160E
MIR160F
MIR162A
MIR162B
MIR164A
MIR164B
MIR164C
MIR164D
MIR164E
MIR164F
MIR166A
MIR166B
MIR166C
MIR166D
MIR166E
MIR166F
MIR166G
MIR166H
MIR166I
MIR166K
MIR166L
MIR166M
MIR166N
MIR167A
MIR167B
MIR167C
MIR167D
MIR167E
MIR167F
MIR167G
MIR167H
MIR167I
MIR167J
MIR168A
MIR168B
MIR169
MIR169B
MIR169C
MIR169D
MIR169E
MIR169F
MIR169H
MIR169I
MIR169J
MIR169K
MIR169L
MIR169M
MIR169N
MIR169O
MIR169P
MIR169g
MIR171
MIR171B
MIR171C
MIR171D
MIR171E
MIR171F
MIR171G
MIR171H
MIR171I
MIR172A
MIR172B
MIR172C
MIR172D
MIR1846A
MIR1846B
MIR1846C
MIR1846D
MIR1846E
MIR1847
MIR1848
MIR1849
MIR1850
MIR1851
MIR1852
MIR1853
MIR1854
MIR1855
MIR1856
MIR1857
MIR1858A
MIR1858B
MIR1859
MIR1860
MIR1861A
MIR1861A2
MIR1861B
MIR1861C
MIR1861D
MIR1861E
MIR1861F
MIR1861G
MIR1861H
MIR1861I
MIR1861J
MIR1861K
MIR1861L
MIR1861M
MIR1861N
MIR1862A
MIR1862B
MIR1862C
MIR1862D
MIR1862E
MIR1863
MIR1863C
MIR1864
MIR1865
MIR1866
MIR1867
MIR1868
MIR1869
MIR1870
MIR1871
MIR1872
MIR1873
MIR1875
MIR1876
MIR1877
MIR1878
MIR1879
MIR1880
MIR1881
MIR1882A
MIR1882B
MIR1882C
MIR1882D
MIR1882E
MIR1882F
MIR1882G
MIR1882H
MIR1883A
MIR1883B
MIR1884A
MIR1884B
MIR2055
MIR2090
MIR2091
MIR2092
MIR2093
MIR2094
MIR2095
MIR2096
MIR2097
MIR2098
MIR2099
MIR2100
MIR2101
MIR2102
MIR2103
MIR2104
MIR2105
MIR2106
MIR2118A
MIR2118B
MIR2118C
MIR2118D
MIR2118E
MIR2118F
MIR2118G
MIR2118H
MIR2118I
MIR2118J
MIR2118K
MIR2118L
MIR2118M
MIR2118N
MIR2118O
MIR2118P
MIR2118Q
MIR2118R
MIR2120
MIR2121A
MIR2121B
MIR2122
MIR2123C
MIR2123a
MIR2123b
MIR2124A
MIR2124B
MIR2124C
MIR2124D
MIR2124E
MIR2124F
MIR2124G
MIR2124H
MIR2124I
MIR2125
MIR2275A
MIR2275B
MIR2275D
MIR2863C
MIR2871B
MIR2873C
MIR319A
MIR319B
MIR390
MIR393
MIR393B
MIR394
MIR395A
MIR395B
MIR395C
MIR395D
MIR395E
MIR395F
MIR395G
MIR395H
MIR395I
MIR395J
MIR395K
MIR395L
MIR395M
MIR395N
MIR395O
MIR395P
MIR395Q
MIR395R
MIR395S
MIR395T
MIR395U
MIR395V
MIR395W
MIR396A
MIR396B
MIR396C
MIR396D
MIR396F
MIR3979
MIR397A
MIR397B
MIR398A
MIR398B
MIR399A
MIR399B
MIR399C
MIR399D
MIR399E
MIR399F
MIR399G
MIR399H
MIR399I
MIR399J
MIR399K
MIR408
MIR413
MIR414
MIR415
MIR416
MIR417
MIR418
MIR419
MIR420
MIR426
MIR435
MIR437
MIR438
MIR439A
MIR439B
MIR439C
MIR439D
MIR439E
MIR439F
MIR439G
MIR439H
MIR439J
MIR440
MIR441A
MIR441B
MIR441C
MIR442
MIR443
MIR444A
MIR444B
MIR444C
MIR444D
MIR444E
MIR444F
MIR445A
MIR445B
MIR445C
MIR445D
MIR445E
MIR445F
MIR445G
MIR445I
MIR446
MIR5143A
MIR5143B
MIR5147
MIR5150
MIR5152
MIR5159
MIR5179
MIR528
MIR529A
MIR529B
MIR530
MIR531
MIR531A2
MIR531B
MIR5485
MIR5491
MIR5508
MIR5513
MIR5516A
MIR5516B
MIR5519
MIR5788
MIR5789
MIR5791
MIR5792
MIR5793
MIR5794
MIR5795
MIR5796
MIR5797
MIR5798
MIR5799
MIR5800
MIR5801
MIR5802
MIR5803
MIR5804
MIR5805
MIR5806
MIR5807
MIR5808
MIR5809
MIR5810
MIR5811
MIR5812
MIR5813
MIR5814
MIR5815
MIR5816
MIR5817
MIR5818
MIR5819
MIR5820
MIR5821
MIR5822
MIR5823
MIR5824
MIR5825
MIR5826
MIR5827
MIR5828
MIR5829
MIR5830
MIR5831
MIR5832
MIR5833
MIR5834
MIR5835
MIR5836
MIR5837
MIR806A
MIR806B
MIR806C
MIR806D
MIR806E
MIR806F
MIR806G
MIR806H
MIR807A
MIR807B
MIR807C
MIR808
MIR809A
MIR809B
MIR809C
MIR809D
MIR809E
MIR809F
MIR809G
MIR809H
MIR810A
MIR811A
MIR811B
MIR811C
MIR812A
MIR812B
MIR812C
MIR812D
MIR812E
MIR812F
MIR812H
MIR812I
MIR812J
MIR812P
MIR812Q
MIR812R
MIR812S
MIR812T
MIR812U
MIR812V
MIR813
MIR814A
MIR814B
MIR814C
MIR815A
MIR815B
MIR815C
MIR816
MIR817
MIR818A
MIR818B
MIR818C
MIR818D
MIR818E
MIR818F
MIR819A
MIR819B
MIR819C
MIR819D
MIR819E
MIR819F
MIR819G
MIR819H
MIR819I
MIR819J
MIR819K
MIR820A
MIR820B
MIR820C
MIR821A
MIR821B
MIR821C
SDT
miR159B
miR159C
miR159D
miR159E
miR159F
miR1874
miR535
miR827
|
INSD
|
-
|
Strain
|
Wild Core Collection
|
-
|
Induced Mutation Lines(NIG Collection)
|
-
|
Sterile Seed Strain
|
-
|
Lethal Embryo Mutantion Strain
|
-
|
Stages in Each Organ - Muant Lines (Gene)
|
-
|
Cultivated Varieties(NIG Collection)
|
-
|
Stages in Each Organ
|
-
|